Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 3.5e-130 468.4 252 100.0
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.6e-119 433.0 251 92.8
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.3e-113 413.3 251 90.8
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.4e-107 393.3 251 86.9
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 3.4e-101 372.1 251 81.3
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 8.4e-100 367.5 251 80.9
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 7.1e-99 364.4 252 81.0
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 9.3e-99 364.0 251 78.9
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.6e-98 361.7 247 77.7
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 6.0e-98 361.3 251 78.5
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.8e-97 359.8 252 79.4
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 4.3e-96 355.1 251 78.1
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 7.4e-96 354.4 253 78.3
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.3e-95 353.6 249 77.1
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.6e-95 353.2 253 76.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.1e-94 350.5 253 77.9
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 6.9e-94 347.8 251 76.9
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 9.0e-94 347.4 251 74.9
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.0e-93 346.3 251 75.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 4.5e-93 345.1 251 75.7
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 7.6e-93 344.4 251 73.7
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.3e-92 343.6 247 76.9
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.3e-92 343.6 252 74.6
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 2.2e-92 342.8 252 74.6
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.2e-92 342.8 251 75.3
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.9e-92 341.7 252 76.2
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.4e-92 340.9 253 76.3
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.1e-91 340.5 252 75.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.9e-91 339.7 243 74.1
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.9e-91 339.7 251 75.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.2e-91 339.0 255 75.3
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 5.5e-91 338.2 247 74.1
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 7.1e-91 337.8 251 71.7
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.2e-90 337.0 252 74.2
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.7e-90 335.9 250 75.6
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.5e-90 335.5 251 71.7
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.3e-89 333.6 255 72.5
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.8e-89 333.2 251 73.3
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 5.1e-89 331.6 248 71.4
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 6.7e-89 331.3 251 70.9
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.5e-88 330.1 253 72.7
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.9e-88 329.7 247 74.1
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 5.6e-88 328.2 252 73.4
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.6e-88 328.2 251 71.7
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 9.6e-88 327.4 255 70.6
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 9.6e-88 327.4 251 73.7
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.3e-87 327.0 251 69.7
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.1e-87 326.2 262 71.0
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 8.2e-87 324.3 246 72.0
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.1e-86 322.4 251 68.9
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 4.0e-86 322.0 251 71.3
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 4.0e-86 322.0 251 68.5
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 4.0e-86 322.0 251 68.9
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 6.9e-86 321.2 349 57.0
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 3.4e-85 318.9 253 68.4
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 3.4e-85 318.9 250 70.4
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 5.8e-85 318.2 246 69.9
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.3e-84 317.0 251 72.1
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.2e-84 316.2 252 71.0
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 2.9e-84 315.8 244 74.6
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.8e-84 315.5 250 70.0
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 6.5e-84 314.7 254 71.7
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 8.4e-84 314.3 238 70.6
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 8.4e-84 314.3 251 70.1
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 8.4e-84 314.3 254 68.9
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.1e-83 313.9 251 71.3
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.4e-83 313.5 246 68.7
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.4e-83 313.5 255 69.8
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.4e-83 313.5 251 68.9
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 2.5e-83 312.8 247 67.6
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.2e-83 312.0 253 68.8
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.2e-82 310.5 244 71.7
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.6e-82 310.1 241 73.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.6e-82 310.1 242 70.7
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 2.1e-82 309.7 242 69.4
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.1e-82 309.7 253 68.4
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 7.9e-82 307.8 247 66.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.8e-81 306.6 243 69.1
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 3.0e-81 305.8 248 71.8
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.9e-81 305.4 253 67.6
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 5.1e-81 305.1 256 68.4
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 6.7e-81 304.7 211 72.5
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.5e-80 303.5 250 69.6
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 3.3e-80 302.4 237 68.4
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 3.3e-80 302.4 205 72.7
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 4.3e-80 302.0 238 68.5
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 7.4e-80 301.2 249 64.7
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 7.4e-80 301.2 249 69.9
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.3e-79 300.4 238 68.1
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.4e-78 297.0 246 66.3
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.8e-78 296.6 270 64.8
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 5.3e-78 295.0 244 66.4
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 9.0e-78 294.3 248 66.9
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 2.0e-77 293.1 261 62.5
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 2.6e-77 292.7 247 63.6
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 3.4e-77 292.4 245 66.1
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 7.7e-77 291.2 227 70.0
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.2e-76 289.7 194 73.2
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 5.0e-76 288.5 246 65.0
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 6.5e-76 288.1 248 63.7
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-75 287.3 244 65.2
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 2.5e-75 286.2 249 63.9
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.0e-73 280.8 273 64.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 5.1e-73 278.5 250 62.4
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 9.7e-72 274.2 295 58.0
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.4e-70 270.4 333 51.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.0e-69 266.5 247 63.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.3e-68 263.8 252 57.9
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 7.2e-67 258.1 252 60.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 7.2e-67 258.1 249 61.0
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.6e-66 256.9 248 58.5
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.7e-66 256.1 281 54.4
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 7.4e-64 248.1 242 60.7
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 8.2e-63 244.6 180 73.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.4e-62 243.0 252 54.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.5e-61 240.4 251 56.2
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.7e-58 229.6 245 59.2
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-57 226.9 253 54.5
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.4e-54 217.2 229 51.1
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 7.0e-54 214.9 247 54.3
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 7.7e-53 211.5 216 57.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 3.8e-52 209.1 250 52.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.5e-51 207.2 148 70.9
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-49 199.9 167 70.1
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 2.8e-47 193.0 136 72.1
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.7e-45 186.4 132 72.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.2e-41 172.2 142 64.8
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.0e-40 170.2 144 69.4
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 5.7e-40 168.7 145 60.7
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.4e-38 163.3 256 41.4
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 3.5e-37 159.5 203 47.3
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.5e-35 153.3 189 52.9
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.1e-34 150.2 338 39.3
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 1.2e-32 144.4 228 38.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.7e-29 133.3 108 67.6
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.0e-28 131.3 244 35.7
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.5e-27 127.5 231 35.1
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 9.5e-27 124.8 116 66.4
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 6.4e-23 112.1 60 85.0
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 6.0e-21 105.5 92 56.5
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 7.8e-21 105.1 72 72.2
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-16 90.1 79 55.7
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 3.4e-16 89.7 79 54.4
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.1e-14 82.0 79 73.4
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.6e-12 75.5 225 29.8
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 2.5e-11 73.6 160 36.2
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 3.7e-07 59.7 53 60.4
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 8.3e-07 58.5 63 49.2
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.1e-06 58.2 34 73.5


User provided reference genes

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