Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 2.0e-50 202.6 141 100.0
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 3.0e-30 135.6 198 57.1
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 3.9e-30 135.2 190 58.9
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 8.7e-30 134.0 188 57.4
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 1.4e-19 100.1 194 50.0
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.7e-17 93.2 194 51.0
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 2.5e-16 89.4 162 55.6
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 1.8e-11 73.2 101 48.5
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.1e-11 72.4 218 44.0
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.2e-10 70.5 225 44.0
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 3.5e-10 68.9 198 46.0
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 3.5e-10 68.9 198 48.0
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 2.2e-09 66.2 39 87.2
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 6.5e-09 64.7 39 87.2
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 8.5e-09 64.3 191 44.0
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.5e-08 63.5 39 82.1
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 2.5e-08 62.8 39 82.1
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.5e-08 62.8 39 82.1
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.5e-08 62.8 39 82.1
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 5.5e-08 61.6 39 79.5
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 5.5e-08 61.6 39 79.5
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 7.2e-08 61.2 39 79.5
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 7.2e-08 61.2 39 82.1
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 7.2e-08 61.2 39 82.1
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 7.2e-08 61.2 39 79.5
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 9.4e-08 60.8 99 41.4
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 9.4e-08 60.8 39 79.5
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 9.4e-08 60.8 39 82.1
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.2e-07 60.5 39 79.5
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 1.2e-07 60.5 39 79.5
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.2e-07 60.5 203 40.4
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 2.1e-07 59.7 144 36.8
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 2.7e-07 59.3 39 74.4
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 2.7e-07 59.3 39 76.9
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 3.6e-07 58.9 39 79.5
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 6.1e-07 58.2 97 41.2
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.1e-07 58.2 191 35.1
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 6.1e-07 58.2 38 76.3
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 6.1e-07 58.2 38 76.3
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 6.1e-07 58.2 37 75.7
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.4e-06 57.0 37 75.7
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.4e-06 57.0 37 75.7
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.8e-06 56.6 39 71.8
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.8e-06 56.6 101 38.6
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.3e-06 56.2 39 71.8
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 3.0e-06 55.8 39 69.2
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 3.0e-06 55.8 39 71.8
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 3.0e-06 55.8 39 71.8
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 3.0e-06 55.8 39 71.8
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 3.0e-06 55.8 99 39.4
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 3.0e-06 55.8 39 74.4
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.0e-06 55.8 39 74.4
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.0e-06 55.8 39 74.4
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 3.0e-06 55.8 39 69.2
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 4.0e-06 55.5 187 36.9
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 4.0e-06 55.5 39 69.2
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.0e-06 55.5 99 39.4
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 6.7e-06 54.7 39 69.2
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 6.7e-06 54.7 37 73.0
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 6.7e-06 54.7 99 39.4
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 6.7e-06 54.7 37 70.3


User provided reference genes

Program Settings