Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 4.3e-19 97.4 67 100.0
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 3.8e-15 84.3 67 80.6
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 1.4e-14 82.4 67 77.6
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 1.9e-14 82.0 67 82.1
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 4.2e-14 80.9 67 79.1
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 4.2e-14 80.9 67 80.6
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 9.3e-14 79.7 67 82.1
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 2.1e-13 78.6 67 77.6
Glyma.07G009200 Glycine max HOM05D007812 ORTHO05D009912 2.7e-13 78.2 67 82.1
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 6.0e-13 77.0 66 81.8
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 2.3e-12 75.1 67 77.6
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 3.0e-12 74.7 67 80.6
Hund18713 Selenicereus undatus HOM05D007812 ORTHO05D009912 1.1e-11 72.8 67 79.1
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 3.3e-11 71.2 61 65.6
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 5.6e-11 70.5 62 62.9
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 7.4e-11 70.1 67 71.6
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 1.3e-10 69.3 67 67.2
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 1.3e-10 69.3 64 59.4
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 1.6e-10 68.9 66 59.1
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 1.6e-10 68.9 66 59.1
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 1.6e-10 68.9 66 59.1
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 1.6e-10 68.9 66 59.1
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 1.6e-10 68.9 66 59.1
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 1.6e-10 68.9 61 62.3
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 2.1e-10 68.6 68 75.0
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 2.1e-10 68.6 68 75.0
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 2.1e-10 68.6 61 63.9
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 2.1e-10 68.6 67 74.6
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 3.7e-10 67.8 67 70.1
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 4.8e-10 67.4 60 66.7
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 4.8e-10 67.4 63 76.2
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 6.2e-10 67.0 59 61.0
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 8.2e-10 66.6 62 64.5
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 8.2e-10 66.6 64 57.8
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 1.1e-09 66.2 67 71.6
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 1.1e-09 66.2 65 55.4
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 1.1e-09 66.2 61 68.9
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 1.8e-09 65.5 62 64.5
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 2.4e-09 65.1 63 68.3
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 2.4e-09 65.1 66 71.2
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 4.0e-09 64.3 67 59.7
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 4.0e-09 64.3 64 71.9
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 4.0e-09 64.3 64 76.6
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 5.3e-09 63.9 64 71.9
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 1.5e-08 62.4 38 89.5
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 1.5e-08 62.4 66 54.5
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 1.5e-08 62.4 67 59.7
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 2.0e-08 62.0 59 78.0
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 2.0e-08 62.0 53 69.8
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 2.0e-08 62.0 67 55.2
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 2.0e-08 62.0 62 56.5
Glyma.08G192400 Glycine max HOM05D007812 ORTHO05D009912 2.6e-08 61.6 61 77.0
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 4.5e-08 60.8 38 86.8
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 4.5e-08 60.8 38 89.5
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 5.8e-08 60.5 67 61.2
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 7.6e-08 60.1 51 66.7
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 1.0e-07 59.7 38 86.8
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 1.3e-07 59.3 36 91.7
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 1.7e-07 58.9 36 88.9
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 1.7e-07 58.9 38 86.8
PGSC0003DMG400004846 Solanum tuberosum HOM05D007812 ORTHO05D009912 1.7e-07 58.9 67 59.7
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 1.7e-07 58.9 67 56.7
Ah.03g142930 Amaranthus hybridus HOM05D007812 ORTHO05D009912 2.2e-07 58.5 66 54.5
CAN.G825.36 Capsicum annuum HOM05D007812 ORTHO05D009912 2.2e-07 58.5 65 55.4
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 2.2e-07 58.5 58 60.3
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 2.9e-07 58.2 56 67.9
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 3.8e-07 57.8 67 56.7
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 3.8e-07 57.8 67 56.7
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 3.8e-07 57.8 67 70.1
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 3.8e-07 57.8 38 86.8
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 4.9e-07 57.4 37 81.1
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 4.9e-07 57.4 37 81.1
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 4.9e-07 57.4 37 81.1
CANSAT56G4159 Cannabis sativa HOM05D007812 ORTHO05D009912 6.5e-07 57.0 67 68.7
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 6.5e-07 57.0 36 83.3
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 8.4e-07 56.6 38 84.2
Nn1g04968 Nelumbo nucifera HOM05D007812 ORTHO05D009912 7.1e-06 53.5 54 59.3


User provided reference genes

Program Settings