Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 5.4e-187 657.5 337 100.0
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 1.3e-159 566.6 325 89.8
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 9.4e-155 550.4 313 90.1
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 2.0e-152 542.7 313 89.8
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 9.1e-134 480.7 310 79.4
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 5.5e-131 471.5 311 78.1
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 1.7e-127 459.9 303 76.9
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 2.2e-127 459.5 308 79.2
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 5.6e-107 391.7 308 66.2
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 2.1e-106 389.8 302 66.9
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 2.3e-105 386.3 269 70.6
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 5.2e-105 385.2 309 66.0
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 8.9e-105 384.4 299 66.6
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.0e-104 383.3 299 66.6
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 2.6e-104 382.9 310 66.5
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 9.8e-104 380.9 320 62.2
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 9.8e-104 380.9 264 73.1
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 9.8e-104 380.9 267 69.3
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 3.7e-103 379.0 312 63.5
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 8.3e-103 377.9 255 73.7
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 3.2e-102 375.9 316 63.9
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 4.1e-102 375.6 300 65.7
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 2.7e-101 372.9 310 67.1
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 2.7e-101 372.9 306 63.7
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 3.5e-101 372.5 310 66.8
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 3.5e-101 372.5 306 63.7
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 6.0e-101 371.7 304 63.5
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 1.7e-100 370.2 301 63.1
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 2.3e-100 369.8 260 68.5
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 2.3e-100 369.8 315 62.2
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 3.0e-100 369.4 305 65.9
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 3.9e-100 369.0 302 64.2
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 3.9e-100 369.0 260 70.0
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 5.0e-100 368.6 310 63.2
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 1.9e-99 366.7 307 62.9
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.9e-99 366.7 257 70.4
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 1.9e-99 366.7 366 56.0
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 2.5e-99 366.3 312 63.1
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 2.5e-99 366.3 305 63.3
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 4.3e-99 365.5 306 64.1
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 4.3e-99 365.5 305 63.9
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 7.3e-99 364.8 261 68.2
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 2.1e-98 363.2 312 61.9
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 1.1e-97 360.9 256 69.5
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 1.4e-97 360.5 311 61.1
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.3e-97 359.8 256 68.0
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 2.6e-96 356.3 301 62.8
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 3.4e-96 355.9 257 68.9
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 4.4e-96 355.5 256 66.0
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 4.9e-95 352.1 263 67.3
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 9.2e-94 347.8 256 66.0
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 6.0e-93 345.1 256 65.6
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 1.0e-92 344.4 310 59.4
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 1.7e-92 343.6 359 54.6
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 6.6e-92 341.7 247 69.6
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 6.6e-92 341.7 277 65.0
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 8.6e-92 341.3 252 68.3
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.6e-90 337.0 255 64.7
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.8e-89 333.6 261 64.8
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 2.3e-89 333.2 248 65.7
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 5.2e-89 332.0 199 83.4
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 5.2e-89 332.0 262 61.1
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 3.4e-88 329.3 297 59.3
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 4.4e-88 328.9 307 57.0
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 5.8e-88 328.6 266 62.4
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 1.3e-87 327.4 264 59.8
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 6.4e-87 325.1 208 78.8
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 6.4e-87 325.1 270 60.7
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 8.4e-87 324.7 309 57.0
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 1.4e-86 323.9 316 56.3
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.4e-86 323.9 256 63.3
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 1.9e-86 323.6 265 63.8
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 7.1e-86 321.6 270 60.0
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 2.3e-84 316.6 270 60.4
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 3.0e-84 316.2 269 59.1
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 3.0e-84 316.2 269 59.1
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 6.6e-84 315.1 306 56.5
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 6.6e-84 315.1 281 58.0
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.5e-83 313.2 253 61.3
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 2.5e-83 313.2 267 59.6
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 1.2e-82 310.8 267 62.5
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 1.2e-82 310.8 257 61.5
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 2.8e-82 309.7 268 58.6
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 8.1e-82 308.1 241 64.7
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 2.4e-81 306.6 318 54.7
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 2.4e-81 306.6 268 59.0
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 4.0e-81 305.8 292 54.8
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 4.0e-81 305.8 292 54.8
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 1.9e-75 287.0 259 55.2
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 3.9e-68 262.7 211 63.0
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 3.3e-67 259.6 300 48.7
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.1e-62 244.6 262 48.1
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 3.5e-61 239.6 315 46.3
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 4.6e-61 239.2 170 69.4
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 1.0e-60 238.0 217 58.5
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 3.3e-59 233.0 194 59.8
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.4e-57 226.9 161 65.2
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 8.7e-52 208.4 150 70.7
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 3.3e-51 206.5 208 56.2
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 3.3e-51 206.5 265 42.3
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 3.1e-49 199.9 201 52.2
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 5.9e-40 169.1 191 53.9
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 2.8e-34 150.2 136 50.7
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.1e-29 134.0 168 45.8
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 3.8e-23 113.2 102 58.8
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 2.4e-17 94.0 324 29.0
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 4.1e-17 93.2 189 33.3
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 1.5e-14 84.7 199 32.7
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 3.6e-13 80.1 56 67.9
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 4.0e-12 76.6 56 64.3
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 2.2e-10 70.9 125 33.6
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 2.4e-09 67.4 264 26.9
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.6e-08 64.7 258 27.1
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 1.0e-07 62.0 249 25.7
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 1.7e-07 61.2 262 26.7
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 2.2e-07 60.8 249 25.7
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 5.0e-07 59.7 249 25.3
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 6.5e-07 59.3 249 24.5
CiPaw.01G092100 Carya illinoinensis HOM05D000912 ORTHO05D008392 6.5e-07 59.3 110 34.5
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 6.5e-07 59.3 266 23.3
Nitab4.5_0000348g0140 Nicotiana tabacum HOM05D000912 ORTHO05D008392 8.5e-07 58.9 104 31.7
Nitab4.5_0001070g0120 Nicotiana tabacum HOM05D000912 ORTHO05D008392 8.5e-07 58.9 104 31.7
AL7G20510 Arabidopsis lyrata HOM05D006655 ORTHO05D007986 1.1e-06 58.5 249 24.1
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 1.1e-06 58.5 241 27.0
SEGI_09830 Sequoiadendron giganteum HOM05D000912 ORTHO05D008392 1.1e-06 58.5 84 35.7
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 1.5e-06 58.2 249 24.9
Sp7g29360 Schrenkiella parvula HOM05D006655 ORTHO05D007986 1.5e-06 58.2 249 24.5
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 1.9e-06 57.8 66 45.5
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 1.9e-06 57.8 66 45.5
RcHm_v2.0_Chr2g0109871 Rosa chinensis HOM05D005310 ORTHO05D006920 1.9e-06 57.8 66 45.5
RcHm_v2.0_Chr5g0011641 Rosa chinensis HOM05D005310 ORTHO05D006920 1.9e-06 57.8 66 45.5
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 1.9e-06 57.8 231 26.0
Os06g0704700 Oryza sativa ssp. japonica HOM05D000912 ORTHO05D008392 2.5e-06 57.4 111 32.4
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 3.2e-06 57.0 264 24.6
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 3.2e-06 57.0 253 23.7
Pp3c25_2890 Physcomitrium patens HOM05D000912 ORTHO05D008392 3.2e-06 57.0 135 32.6
RcHm_v2.0_Chr5g0061601 Rosa chinensis HOM05D005310 ORTHO05D006920 3.2e-06 57.0 66 45.5
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 3.2e-06 57.0 253 25.3
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 4.2e-06 56.6 68 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2449 Anthoceros agrestis HOM05D006655 ORTHO05D007986 5.5e-06 56.2 225 24.9
AagrBONN_evm.TU.Sc2ySwM_228.4434 Anthoceros agrestis HOM05D000912 ORTHO05D008392 5.5e-06 56.2 72 41.7
Aqoxy7G02558 Aquilegia oxysepala HOM05D000912 ORTHO05D008392 5.5e-06 56.2 111 32.4
Carub.0001s1646 Capsella rubella HOM05D000912 ORTHO05D008392 5.5e-06 56.2 111 33.3
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 5.5e-06 56.2 249 24.1
FAN21G0719 Fragaria x ananassa HOM05D006655 ORTHO05D007986 5.5e-06 56.2 241 25.3
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 5.5e-06 56.2 53 43.4
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 5.5e-06 56.2 265 23.8
TAR626G1580 Trochodendron aralioides HOM05D000912 ORTHO05D008392 5.5e-06 56.2 110 31.8
unitig_0.g743 Utricularia gibba HOM05D005310 ORTHO05D006920 5.5e-06 56.2 66 43.9
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 7.2e-06 55.8 66 43.9
AT1G16720 Arabidopsis thaliana HOM05D000912 ORTHO05D008392 9.5e-06 55.5 111 32.4
CDE05G1860 Ceratophyllum demersum HOM05D000912 ORTHO05D008392 9.5e-06 55.5 110 32.7
DCAR_028447 Daucus carota HOM05D000912 ORTHO05D008392 9.5e-06 55.5 111 32.4
Duzib168G2063 Durio zibethinus HOM05D006655 ORTHO05D007986 9.5e-06 55.5 245 23.7
FvH4_6g36340 Fragaria vesca HOM05D000912 ORTHO05D008392 9.5e-06 55.5 111 32.4
FAN14G0321 Fragaria x ananassa HOM05D000912 ORTHO05D001232 9.5e-06 55.5 111 32.4
FAN14G4043 Fragaria x ananassa HOM05D000912 ORTHO05D001232 9.5e-06 55.5 111 32.4
FAN16G3233 Fragaria x ananassa HOM05D006655 ORTHO05D007986 9.5e-06 55.5 241 24.9
Glyma.07G000500 Glycine max HOM05D000912 ORTHO05D008392 9.5e-06 55.5 83 36.1
Glyma.08G226600 Glycine max HOM05D000912 ORTHO05D008392 9.5e-06 55.5 83 36.1
Os02g0137700 Oryza sativa ssp. japonica HOM05D000912 ORTHO05D008392 9.5e-06 55.5 111 31.5
Phvul.010G165800 Phaseolus vulgaris HOM05D000912 ORTHO05D008392 9.5e-06 55.5 83 36.1
Prupe.3G028100 Prunus persica HOM05D000912 ORTHO05D008392 9.5e-06 55.5 111 32.4
Rhsim13G0216500 Rhododendron simsii HOM05D006655 ORTHO05D007986 9.5e-06 55.5 241 24.9
RcHm_v2.0_Chr2g0148341 Rosa chinensis HOM05D000912 ORTHO05D008392 9.5e-06 55.5 111 32.4
TPR.G38709 Trifolium pratense HOM05D000912 ORTHO05D008392 9.5e-06 55.5 83 36.1
VMungo0331G0828 Vigna mungo HOM05D000912 ORTHO05D008392 9.5e-06 55.5 83 36.1


User provided reference genes

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