Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 2.4e-303 1044.6 504 100.0
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 1.4e-284 982.2 512 92.0
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 4.4e-265 917.5 512 85.9
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 1.6e-262 909.1 509 85.9
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 1.1e-244 849.7 510 78.8
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 2.7e-243 845.1 511 78.1
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 6.3e-240 833.9 512 77.7
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 3.1e-239 831.6 509 77.0
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 3.1e-239 831.6 510 77.1
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 2.0e-238 828.9 511 77.3
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 7.0e-231 803.9 468 80.3
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.7e-224 781.6 504 75.2
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 1.1e-223 780.0 504 75.2
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 4.1e-223 778.1 520 73.3
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 1.7e-192 676.4 523 61.4
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 6.0e-190 667.9 525 62.5
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 3.0e-189 665.6 519 62.8
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 3.9e-189 665.2 481 65.3
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 3.9e-189 665.2 524 62.0
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 2.5e-188 662.5 525 61.5
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 5.6e-188 661.4 524 61.3
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 1.4e-186 656.8 514 60.7
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 3.1e-186 655.6 515 61.9
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 5.3e-186 654.8 523 61.2
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 6.9e-186 654.4 526 61.2
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 1.4e-183 646.7 525 60.2
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 9.3e-183 644.0 524 59.4
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 2.7e-182 642.5 521 60.1
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 6.0e-182 641.3 479 62.6
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 7.9e-182 641.0 523 59.7
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 5.1e-181 638.3 520 58.5
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 5.1e-181 638.3 522 58.0
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 1.1e-180 637.1 521 59.1
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 1.5e-180 636.7 522 59.0
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 9.6e-180 634.0 522 59.8
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 9.6e-180 634.0 522 59.8
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 2.1e-179 632.9 528 58.5
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 2.8e-179 632.5 516 59.5
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 8.1e-179 630.9 526 59.9
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 8.1e-179 630.9 523 59.1
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 1.1e-178 630.6 524 58.6
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 1.8e-178 629.8 524 56.5
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 3.1e-178 629.0 525 58.7
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 5.3e-178 628.2 526 58.0
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 5.3e-178 628.2 526 58.6
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 5.3e-178 628.2 523 56.2
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.5e-177 626.7 523 57.0
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 1.5e-177 626.7 526 58.6
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 4.5e-177 625.2 523 56.8
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.0e-176 624.0 487 60.6
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 1.3e-176 623.6 523 56.0
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 1.3e-176 623.6 526 58.2
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 3.8e-176 622.1 527 55.4
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.8e-176 622.1 522 58.8
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 3.8e-176 622.1 607 53.2
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 1.1e-175 620.5 524 56.7
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 3.2e-175 619.0 518 56.9
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 5.5e-175 618.2 521 57.2
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 5.5e-175 618.2 524 57.8
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 7.1e-175 617.8 523 56.0
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 1.2e-174 617.1 499 58.5
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 1.2e-174 617.1 523 56.2
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.2e-174 617.1 522 58.4
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 2.1e-174 616.3 528 56.2
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 1.0e-173 614.0 518 54.8
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 1.0e-173 614.0 518 56.6
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 1.3e-173 613.6 516 57.4
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.0e-173 612.5 480 60.6
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 5.1e-173 611.7 530 55.1
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 8.7e-173 610.9 521 55.1
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 8.7e-173 610.9 530 57.9
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 3.3e-172 609.0 523 57.4
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 2.1e-171 606.3 547 54.7
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 8.2e-171 604.4 522 56.7
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 5.3e-170 601.7 555 53.5
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 6.9e-170 601.3 520 55.2
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 5.9e-169 598.2 556 53.1
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 5.9e-169 598.2 550 53.5
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 5.9e-169 598.2 501 55.9
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 3.8e-168 595.5 447 63.1
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 8.5e-168 594.3 559 52.2
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 8.5e-168 594.3 480 60.6
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 8.5e-168 594.3 516 55.8
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 1.9e-167 593.2 516 56.2
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 2.7e-166 589.3 519 56.1
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.0e-165 587.4 471 59.4
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 6.3e-163 578.2 466 57.3
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 3.8e-160 568.9 519 53.8
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 6.5e-160 568.2 522 55.4
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 2.5e-159 566.2 432 62.3
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 2.5e-159 566.2 515 56.5
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 5.5e-159 565.1 519 53.4
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.6e-158 563.5 515 55.9
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.4e-157 560.5 519 52.6
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 1.7e-155 553.5 529 52.7
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 2.8e-155 552.7 565 52.4
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 1.4e-154 550.4 498 54.8
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 1.3e-147 527.3 418 57.4
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 4.1e-146 522.3 413 59.8
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.9e-144 516.2 697 42.9
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 2.3e-141 506.5 400 60.0
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 1.7e-139 500.4 417 60.0
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 2.9e-136 489.6 413 57.9
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 7.0e-130 468.4 522 48.1
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.9e-129 465.3 483 51.3
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.5e-127 460.7 583 45.5
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 2.3e-125 453.4 410 55.9
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 5.9e-121 438.7 525 44.0
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 4.3e-119 432.6 384 55.2
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 1.2e-118 431.0 374 57.2
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 3.1e-109 399.8 523 43.8
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 4.4e-108 396.0 234 81.6
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.9e-106 390.6 310 60.0
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 5.4e-106 389.0 345 56.8
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 6.6e-96 355.5 300 57.7
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 1.5e-95 354.4 263 60.5
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 9.5e-95 351.7 197 85.3
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 4.7e-94 349.4 254 67.7
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 2.0e-84 317.4 252 59.9
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 3.2e-82 310.1 253 60.1
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 8.7e-80 302.0 223 65.9
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 9.6e-79 298.5 249 60.2
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 4.0e-77 293.1 210 64.8
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 2.0e-76 290.8 261 54.8
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 3.4e-76 290.0 255 56.9
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 2.2e-75 287.3 255 56.5
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 4.9e-75 286.2 297 49.2
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 4.9e-75 286.2 357 44.3
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 1.1e-74 285.0 247 57.5
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 1.2e-73 281.6 250 56.4
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 1.0e-72 278.5 250 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 2.3e-72 277.3 233 58.8
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 3.7e-70 270.0 208 62.0
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 1.3e-64 251.5 226 58.4
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 2.8e-62 243.8 251 50.2
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 4.9e-59 233.0 166 69.3
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.7e-57 227.3 251 47.0
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 1.3e-56 224.9 245 48.2
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 3.0e-56 223.8 249 50.2
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 3.9e-56 223.4 167 58.1
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 6.7e-56 222.6 143 70.6
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 1.3e-51 208.4 248 46.0
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.2e-49 201.8 176 57.4
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 9.1e-45 185.7 159 59.1
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.0e-44 184.5 162 53.7
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.4e-42 178.3 217 46.1
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 2.7e-41 174.1 184 50.5
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 9.1e-37 159.1 170 45.9
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 6.5e-35 152.9 279 37.3
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.4e-34 151.8 111 59.5
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 3.6e-33 147.1 125 56.8
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 3.6e-33 147.1 100 67.0
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 1.6e-28 131.7 70 80.0
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 2.6e-28 131.0 123 50.4
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.2e-27 127.9 170 44.1
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 8.0e-25 119.4 101 57.4
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 1.4e-24 118.6 110 54.5
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 8.8e-24 115.9 72 68.1
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 6.3e-22 109.8 88 61.4
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 2.0e-20 104.8 88 62.5
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.2e-19 101.3 203 34.5
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.1e-18 99.0 79 60.8
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.1e-18 99.0 87 57.5
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 2.5e-18 97.8 59 72.9
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.1e-13 82.4 107 45.8
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.4e-13 82.0 46 76.1
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 2.7e-12 77.8 46 71.7
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 3.8e-11 73.9 55 58.2
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 8.6e-11 72.8 65 44.6
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 8.0e-09 66.2 69 43.5
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 8.0e-09 66.2 69 43.5
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 1.0e-08 65.9 69 43.5
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 1.8e-08 65.1 93 41.9
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.8e-08 65.1 60 55.0
C09p23930 Brassica napus HOM05D000219 ORTHO05D017689 8.9e-08 62.8 69 42.0
SHI31712 Sapria himalayana HOM05D000219 ORTHO05D366583 8.9e-08 62.8 37 70.3
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 2.2e-06 58.2 47 59.6
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 2.2e-06 58.2 47 59.6
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 2.2e-06 58.2 47 59.6
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 4.9e-06 57.0 48 60.4


User provided reference genes

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