Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1766.5 1026 100.0
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1579.7 1023 88.4
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1494.6 1028 83.0
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1378.6 1025 77.8
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1332.8 1026 75.8
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1305.0 1040 72.8
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1280.4 1014 74.1
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1270.8 980 73.4
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1266.9 1039 71.6
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1258.0 1036 71.7
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 0.0e+00 1255.7 1061 71.7
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1246.1 1037 72.2
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1199.1 1037 68.4
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1191.0 1062 65.5
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1186.0 1063 65.9
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1159.4 1032 64.5
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1158.3 1032 64.6
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1156.7 1031 65.1
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1153.7 1048 64.9
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1151.7 863 76.1
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1144.8 1070 63.1
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1142.5 1031 63.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1140.2 1068 63.2
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1135.9 1041 64.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1134.0 1020 67.4
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1128.2 1033 63.5
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1121.7 1063 64.3
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1121.3 1039 64.9
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 0.0e+00 1116.7 1081 63.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1114.0 1036 64.8
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1105.5 1036 65.5
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1103.6 1065 59.7
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1101.3 1037 63.5
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1088.6 1045 62.7
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1087.0 1045 62.7
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1087.0 1084 61.1
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1084.7 1043 64.9
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1082.8 1027 64.5
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 0.0e+00 1077.0 1083 59.8
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 0.0e+00 1076.2 1044 64.7
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 3.5e-311 1071.6 1032 62.5
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.1e-310 1070.1 1044 63.1
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.5e-309 1064.7 1004 61.0
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.7e-308 1062.8 1199 57.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 1.7e-308 1062.8 1040 61.3
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.2e-308 1062.4 1086 59.7
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.5e-307 1058.9 1059 60.8
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 7.2e-307 1057.4 1012 62.4
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.6e-304 1048.9 1020 62.4
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.3e-303 1046.6 1030 58.5
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.7e-303 1045.0 1045 61.0
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.4e-302 1043.1 1032 62.5
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.8e-302 1042.7 1002 62.7
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 4.1e-302 1041.6 1031 59.3
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 7.7e-301 1037.3 1033 59.0
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 3.8e-300 1035.0 1021 60.5
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.9e-299 1032.7 1097 57.3
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 4.2e-299 1031.6 1081 57.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 8.0e-298 1027.3 1085 59.4
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 3.0e-297 1025.4 1031 58.8
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.3e-296 1021.9 1042 63.3
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.3e-295 1017.7 1043 57.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.1e-294 1015.4 910 61.9
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 7.0e-294 1014.2 955 61.9
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.3e-292 1010.0 989 62.0
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 8.5e-292 1007.3 1041 57.7
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.1e-291 1006.9 1060 59.2
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.5e-291 1006.5 1033 56.7
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.0e-289 1000.3 1020 61.9
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 3.0e-289 998.8 970 60.4
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 4.0e-289 998.4 1061 60.0
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 2.6e-288 995.7 1030 57.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 9.7e-288 993.8 1049 56.7
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.4e-286 989.9 1053 55.7
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.7e-284 983.0 1033 60.9
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 8.5e-284 980.7 1042 60.4
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 3.6e-282 975.3 1050 58.1
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.8e-281 973.0 1021 60.8
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.8e-281 973.0 1037 59.8
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 4.8e-279 964.9 906 61.3
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 7.0e-278 961.1 1043 58.6
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 7.2e-275 951.0 856 61.9
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 5.2e-273 944.9 1046 55.4
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 5.2e-273 944.9 1037 55.5
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.2e-269 933.7 1032 54.3
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.3e-268 930.2 1034 54.5
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 2.5e-267 926.0 1013 57.6
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.5e-264 916.8 1052 57.1
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 3.4e-264 915.6 1061 52.8
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 1.9e-251 873.2 1069 51.3
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 5.6e-251 871.7 900 58.3
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.3e-249 866.3 856 58.5
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 5.2e-249 865.1 889 56.9
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 9.9e-248 860.9 1074 50.1
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 7.1e-246 854.7 1023 53.3
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 3.0e-244 849.4 1039 50.0
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 6.0e-237 825.1 1064 49.1
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.0e-232 810.1 826 57.1
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 2.7e-229 799.7 1063 48.2
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-225 787.7 713 64.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 1.5e-219 767.3 591 70.7
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.0e-212 743.0 618 65.0
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 6.7e-212 741.9 1008 48.9
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-206 723.8 616 65.7
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.1e-195 688.0 1021 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.8e-185 654.1 920 45.2
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 9.7e-179 631.7 1168 37.5
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 4.5e-176 622.9 1048 40.5
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.4e-172 611.3 545 62.8
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 2.0e-171 607.4 739 54.4
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 1.3e-167 594.7 495 67.9
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.5e-166 590.5 899 46.3
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.6e-155 553.9 646 51.7
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 3.7e-154 550.1 596 56.2
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 7.8e-152 542.3 1110 36.3
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.1e-134 485.3 921 37.0
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 9.3e-121 439.1 367 65.1
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 4.3e-102 377.1 871 36.1
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.5e-99 367.1 362 58.6
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 2.6e-91 341.3 628 40.8
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.1e-84 317.8 295 59.0
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.5e-75 288.9 859 33.9
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 4.8e-69 267.3 587 36.6
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 5.0e-66 257.3 227 68.7
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 8.2e-61 240.0 200 65.5
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.6e-59 235.0 954 26.3
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 3.6e-56 224.6 254 59.4
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.2e-53 215.3 175 66.9
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 9.1e-52 209.9 227 56.4
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 7.7e-43 180.3 150 70.0
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 2.6e-38 165.2 226 58.8
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 2.1e-32 145.6 156 56.4
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 6.8e-31 140.6 117 69.2
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.3e-26 126.3 132 54.5
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.3e-26 126.3 217 49.8
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.5e-25 122.9 228 46.1
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 3.2e-20 105.1 58 84.5
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 5.1e-18 97.8 79 57.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 6.6e-18 97.4 51 88.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.3e-17 94.7 81 60.5
Sc16g0005110 Simmondsia chinensis HOM05D060119 ORTHO05D019833 9.6e-09 67.0 116 44.0
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 6.2e-08 64.3 45 62.2
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 6.2e-08 64.3 45 62.2
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 2.4e-07 62.4 45 60.0
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 2.4e-07 62.4 45 60.0
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 5.2e-07 61.2 45 57.8
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 1.2e-06 60.1 54 64.8
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 1.2e-06 60.1 56 62.5
Psat3g173480 Pisum sativum HOM05D002362 ORTHO05D002465 1.5e-06 59.7 54 64.8
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 3.4e-06 58.5 61 54.1
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 4.4e-06 58.2 143 35.7
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 7.6e-06 57.4 59 57.6


User provided reference genes

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