Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1599.3 782 100.0
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1483.0 782 92.7
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1462.6 783 91.4
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1456.4 783 91.1
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1379.8 782 85.5
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1331.2 782 83.6
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1324.7 786 82.4
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1323.5 783 82.6
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1306.6 783 82.8
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1305.4 787 81.3
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1288.1 783 81.4
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1188.3 783 74.1
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1184.9 783 73.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1174.1 784 72.8
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1173.3 786 73.5
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1164.8 784 73.1
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1161.7 786 72.4
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1157.1 785 72.6
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1139.4 785 71.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1135.9 785 71.3
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1135.6 772 72.3
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1127.5 785 71.0
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1127.5 785 71.0
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1127.1 785 71.0
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1118.2 786 70.2
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1113.6 785 70.1
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1099.0 773 70.5
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1092.4 773 68.7
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1086.2 781 68.5
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1084.7 775 69.5
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1084.3 779 68.4
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 775 69.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1081.2 791 67.9
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.8e-310 1068.9 793 67.1
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 3.1e-310 1068.1 774 68.1
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.7e-308 1062.4 826 65.0
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 8.4e-308 1060.1 775 67.9
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 6.0e-306 1053.9 775 66.7
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 1.8e-305 1052.4 776 67.1
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.3e-305 1052.0 775 67.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.5e-304 1049.3 770 66.8
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 5.7e-304 1047.3 776 66.9
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 4.8e-303 1044.3 778 66.7
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 4.1e-302 1041.2 776 66.1
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-301 1039.6 785 66.4
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.4e-301 1038.1 787 66.5
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 7.6e-301 1036.9 805 65.0
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.0e-300 1036.6 786 65.9
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 1.0e-300 1036.6 779 66.2
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.9e-300 1035.0 769 67.4
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 2.8e-295 1018.5 777 66.2
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 8.2e-295 1016.9 770 67.4
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 3.1e-294 1015.0 774 65.6
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-293 1013.1 776 64.8
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 774 64.7
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 2.9e-292 1008.4 779 65.2
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 2.9e-292 1008.4 774 65.0
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 6.5e-292 1007.3 780 65.0
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 1.4e-291 1006.1 778 65.3
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.5e-291 1005.4 774 65.5
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.2e-291 1004.6 777 64.5
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 4.2e-291 1004.6 772 65.5
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 774 64.9
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.6e-290 1002.7 777 64.1
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 7.9e-290 1000.3 779 64.4
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 2.3e-289 998.8 777 64.5
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 6.7e-289 997.3 791 64.6
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 8.8e-289 996.9 776 64.8
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.3e-288 995.0 773 64.8
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 7.4e-288 993.8 797 63.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 7.4e-288 993.8 773 65.2
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 9.7e-288 993.4 791 64.2
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.1e-286 988.0 809 60.4
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 5.3e-286 987.6 755 65.4
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 5.3e-286 987.6 786 64.0
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 6.9e-286 987.3 774 63.0
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.5e-285 986.1 789 63.2
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.6e-285 985.3 793 62.7
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.6e-285 985.3 774 64.7
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.2e-282 976.5 781 63.0
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.6e-282 974.9 772 63.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.3e-281 972.2 773 62.7
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 3.0e-281 971.8 760 64.2
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.4e-280 967.2 769 62.3
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.7e-279 966.1 773 62.6
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.7e-279 966.1 778 62.0
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.4e-278 962.2 778 62.6
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 7.0e-278 960.7 779 63.0
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 6.5e-276 954.1 777 61.0
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 6.5e-276 954.1 778 62.0
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 3.0e-273 945.3 813 59.8
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.0e-273 945.3 770 60.9
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 6.7e-273 944.1 781 61.3
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 8.8e-273 943.7 777 61.3
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.0e-272 942.6 780 61.4
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 4.4e-272 941.4 777 61.3
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.4e-272 941.4 781 61.3
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 9.7e-272 940.3 778 62.1
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.2e-271 939.1 774 61.8
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.8e-271 938.7 774 61.1
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.7e-271 938.3 781 61.2
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.8e-270 936.0 770 60.8
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 7.0e-270 934.1 774 59.7
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.2e-269 933.3 782 59.1
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.6e-269 932.9 770 60.3
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.6e-269 932.9 772 60.9
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 7.7e-269 930.6 763 60.7
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.3e-268 929.9 776 60.2
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 2.9e-268 928.7 764 60.9
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.1e-267 926.8 771 60.2
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 4.2e-267 924.9 772 59.5
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 4.2e-267 924.9 770 59.4
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.2e-266 923.3 764 60.5
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 3.7e-263 911.8 768 60.3
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.4e-262 909.8 777 58.3
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.8e-262 909.4 778 60.2
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.0e-261 906.0 744 62.5
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.0e-261 906.0 761 61.0
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.7e-261 905.6 777 58.7
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.3e-260 903.3 780 60.6
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.5e-259 899.0 785 59.4
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.4e-257 893.3 781 59.2
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 3.1e-254 882.1 790 57.3
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 7.8e-253 877.5 723 62.4
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.5e-251 873.2 787 58.3
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 4.0e-249 865.1 761 59.4
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 9.8e-248 860.5 721 63.1
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.0e-244 849.0 766 56.0
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 3.9e-244 848.6 786 57.9
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.1e-243 847.0 779 55.3
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.9e-243 846.3 775 57.0
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 3.6e-242 842.0 774 56.2
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 9.8e-240 833.9 857 53.6
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.7e-229 799.3 781 55.4
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 3.5e-229 798.9 781 55.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 5.8e-224 781.6 735 54.4
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.7e-212 743.4 708 56.4
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 2.9e-207 726.1 400 87.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 8.4e-207 724.5 400 87.5
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.5e-203 713.8 687 54.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.8e-183 646.0 779 45.2
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.9e-175 619.8 751 44.5
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.8e-172 610.5 772 44.9
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 6.7e-172 608.6 759 44.7
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.1e-169 601.3 798 44.5
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.2e-167 593.6 779 42.0
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 3.1e-161 573.2 446 62.8
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.6e-152 544.3 762 41.7
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.7e-152 543.5 414 65.5
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 8.3e-146 521.9 405 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.4e-140 504.6 563 48.3
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 6.4e-130 469.2 270 79.3
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.6e-125 453.4 460 53.9
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.4e-113 414.1 254 74.4
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.4e-107 393.3 444 46.4
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 5.4e-97 359.8 740 33.9
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.3e-77 295.4 191 75.4
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 5.0e-74 283.5 760 29.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.9e-72 276.2 267 53.9
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 4.1e-60 237.3 282 46.5
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.3e-46 191.0 152 63.2
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.2e-39 167.2 93 78.5
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.0e-36 156.8 149 56.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 8.0e-32 143.3 76 85.5
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.5e-22 112.5 172 36.6
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.5e-19 101.3 142 37.3
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 5.4e-12 77.4 103 38.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.6e-11 75.9 73 46.6
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 8.6e-10 70.1 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 4.3e-09 67.8 39 74.4
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.2e-08 66.2 111 36.0


User provided reference genes

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