Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.2e-76 289.7 139 100.0
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 8.8e-67 256.9 139 89.2
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.4e-59 233.0 140 80.7
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 2.7e-55 218.8 140 76.4
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.2e-47 193.4 141 68.8
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 5.2e-43 177.9 140 65.0
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 4.4e-42 174.9 141 66.7
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 5.8e-42 174.5 141 66.7
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 7.3e-37 157.5 131 60.3
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 4.7e-36 154.8 133 59.4
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 8.1e-36 154.1 120 64.2
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.8e-35 152.9 120 65.0
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 2.6e-34 149.1 135 59.3
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 8.3e-33 144.1 147 53.1
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 5.4e-32 141.4 135 52.6
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 2.1e-31 139.4 134 56.0
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 7.8e-31 137.5 139 53.2
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.0e-30 137.1 140 52.9
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 2.3e-30 136.0 140 54.3
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 2.3e-27 125.9 118 53.4
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 5.8e-26 121.3 132 45.5
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 9.9e-26 120.6 126 53.2
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 1.9e-24 116.3 140 47.9
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.4e-24 115.9 137 46.0
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 5.4e-24 114.8 138 46.4
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.2e-23 113.6 138 45.7
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 2.1e-23 112.8 136 44.9
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 4.6e-23 111.7 136 44.9
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 7.8e-23 110.9 97 55.7
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 1.0e-22 110.5 138 41.3
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.7e-22 109.8 132 44.7
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.3e-22 109.4 137 45.3
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 3.0e-22 109.0 136 42.6
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.1e-21 107.1 141 43.3
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 1.1e-21 107.1 136 42.6
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 1.5e-21 106.7 148 44.6
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 1.5e-21 106.7 138 42.8
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 1.5e-21 106.7 137 41.6
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.5e-21 106.7 132 39.4
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 2.5e-21 105.9 92 55.4
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 3.3e-21 105.5 137 42.3
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 4.3e-21 105.1 136 42.6
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 4.3e-21 105.1 137 43.8
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.2e-20 103.6 132 38.6
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 1.6e-20 103.2 138 39.1
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 3.6e-20 102.1 85 52.9
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 6.2e-20 101.3 136 46.3
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 8.1e-20 100.9 132 42.4
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.4e-19 100.1 134 42.5
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 6.8e-19 97.8 132 40.2
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 6.8e-19 97.8 87 54.0
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 1.2e-18 97.1 136 41.2
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 1.2e-18 97.1 134 39.6
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.5e-18 96.7 136 39.0
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.0e-18 96.3 117 47.9
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 2.6e-18 95.9 133 39.1
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 3.4e-18 95.5 81 53.1
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 3.4e-18 95.5 138 40.6
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.4e-18 95.1 132 40.2
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.6e-18 94.4 132 39.4
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 7.1e-16 87.8 75 53.3
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 1.2e-15 87.0 139 38.8
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 2.1e-15 86.3 115 40.0
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.7e-15 85.9 68 54.4
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.5e-15 85.5 128 39.8
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.5e-15 85.5 128 39.8
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 6.0e-15 84.7 128 39.8
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 6.0e-15 84.7 128 39.8
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 6.0e-15 84.7 128 39.8
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.8e-15 84.3 125 38.4
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.0e-14 84.0 73 56.2
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.3e-14 83.6 93 43.0
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 5.1e-14 81.6 123 41.5
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.6e-14 81.3 105 40.0
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 6.6e-14 81.3 105 40.0
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.1e-13 80.5 120 42.5
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 1.1e-13 80.5 136 39.7
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.5e-13 80.1 72 50.0
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 3.3e-13 79.0 143 32.2
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 5.6e-13 78.2 87 49.4
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 5.6e-13 78.2 86 43.0
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 5.6e-13 78.2 97 42.3
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 7.3e-13 77.8 94 41.5
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 2.1e-12 76.3 82 46.3
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 2.1e-12 76.3 98 40.8
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 2.8e-12 75.9 119 37.0
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 3.6e-12 75.5 72 50.0
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 3.6e-12 75.5 71 49.3
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 6.2e-12 74.7 88 42.0
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 8.1e-12 74.3 87 39.1
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 8.1e-12 74.3 80 48.8
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.4e-11 73.6 119 36.1
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 1.8e-11 73.2 59 50.8
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 2.4e-11 72.8 89 44.9
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 3.1e-11 72.4 71 47.9
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 4.0e-11 72.0 71 46.5
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 5.3e-11 71.6 86 39.5
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 5.3e-11 71.6 86 41.9
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 6.9e-11 71.2 119 36.1
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 6.9e-11 71.2 119 36.1
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 6.9e-11 71.2 88 44.3
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 6.9e-11 71.2 74 45.9
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 6.9e-11 71.2 115 38.3
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 6.9e-11 71.2 74 51.4
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 9.0e-11 70.9 92 41.3
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 9.0e-11 70.9 88 44.3
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 9.0e-11 70.9 86 41.9
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 9.0e-11 70.9 75 42.7
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 9.0e-11 70.9 91 39.6
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.5e-10 70.1 57 52.6
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.5e-10 70.1 72 48.6
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 2.0e-10 69.7 94 39.4
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 2.0e-10 69.7 75 45.3
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 4.4e-10 68.6 71 52.1
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 4.4e-10 68.6 62 51.6
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 5.8e-10 68.2 76 43.4
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 7.6e-10 67.8 72 45.8
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 7.6e-10 67.8 67 46.3
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 7.6e-10 67.8 72 45.8
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 7.6e-10 67.8 76 47.4
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 9.9e-10 67.4 55 54.5
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 9.9e-10 67.4 115 34.8
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 2.2e-09 66.2 54 55.6
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.8e-09 65.5 54 53.7
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 3.8e-09 65.5 35 71.4
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 3.8e-09 65.5 66 43.9
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 6.4e-09 64.7 84 41.7
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 6.4e-09 64.7 68 48.5
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 8.4e-09 64.3 54 55.6
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 8.4e-09 64.3 54 55.6
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 8.4e-09 64.3 54 55.6
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.1e-08 63.9 82 41.5
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 4.2e-08 62.0 33 66.7
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 9.3e-08 60.8 81 39.5
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 9.3e-08 60.8 76 42.1
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 1.6e-07 60.1 61 45.9
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.1e-07 59.7 65 43.1
SEGI_01582 Sequoiadendron giganteum HOM05D055431 ORTHO05D005760 2.7e-07 59.3 88 31.8
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 2.7e-07 59.3 31 71.0
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 3.5e-07 58.9 49 51.0
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 4.6e-07 58.5 52 46.2
Pp3c22_2900 Physcomitrium patens HOM05D023101 ORTHO05D005760 2.3e-06 56.2 92 35.9
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 2.3e-06 56.2 87 39.1
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.9e-06 55.5 89 33.7
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 6.6e-06 54.7 70 35.7


User provided reference genes

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