Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 3.0e-151 538.5 274 100.0
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 3.0e-151 538.5 274 100.0
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 2.1e-136 489.2 283 90.5
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 5.1e-127 458.0 288 85.4
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 7.4e-126 454.1 291 85.2
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 9.2e-92 340.9 295 65.8
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 2.4e-84 316.2 291 62.9
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 7.0e-84 314.7 290 62.8
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 9.8e-78 294.3 296 59.1
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 2.2e-77 293.1 261 65.9
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 6.4e-77 291.6 278 60.8
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 2.4e-68 263.1 288 54.5
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 5.4e-60 235.3 280 51.1
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 2.1e-59 233.4 257 52.9
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 6.0e-59 231.9 280 50.0
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 2.1e-51 206.8 292 45.9
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 7.8e-51 204.9 301 45.2
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 2.3e-50 203.4 283 45.9
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 9.6e-49 198.0 268 44.4
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 2.8e-48 196.4 319 43.3
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 6.9e-47 191.8 266 48.1
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 9.0e-47 191.4 266 42.1
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 1.5e-46 190.7 267 43.1
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 2.6e-46 189.9 267 44.9
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 1.3e-45 187.6 261 47.9
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 2.9e-45 186.4 272 41.5
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.8e-45 186.0 266 47.7
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.8e-45 186.0 261 47.5
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.4e-45 185.3 266 47.4
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.4e-45 185.3 266 47.4
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 2.4e-44 183.3 306 42.5
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 3.2e-44 183.0 305 41.0
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 5.4e-44 182.2 266 46.6
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 2.7e-43 179.9 286 43.4
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 4.6e-43 179.1 257 45.9
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.0e-42 177.9 258 43.4
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 5.1e-42 175.6 322 41.0
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 6.7e-42 175.3 280 42.9
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 8.7e-42 174.9 237 48.5
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 3.3e-41 172.9 267 43.8
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 7.4e-41 171.8 261 41.8
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 7.4e-41 171.8 275 44.7
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 2.1e-40 170.2 261 42.1
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 2.8e-40 169.9 287 40.4
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 3.7e-40 169.5 234 47.0
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.7e-40 169.5 261 42.9
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 1.8e-39 167.2 287 38.0
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 6.9e-39 165.2 292 37.7
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.2e-38 164.5 273 41.4
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 5.8e-38 162.2 254 40.9
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 5.8e-38 162.2 260 40.4
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 1.1e-36 157.9 282 37.6
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 9.3e-36 154.8 254 42.9
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.6e-35 154.1 254 42.9
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.0e-34 151.4 255 40.4
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 3.3e-33 146.4 293 35.8
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 2.1e-32 143.7 244 42.2
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 2.8e-32 143.3 283 37.8
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 3.7e-32 142.9 267 41.2
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 4.5e-30 136.0 253 38.7
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.3e-29 134.4 270 37.4
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 2.9e-29 133.3 227 40.1
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 2.5e-28 130.2 286 34.6
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 3.2e-28 129.8 282 35.1
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 5.5e-28 129.0 286 35.3
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 7.1e-28 128.6 276 35.1
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 2.1e-27 127.1 291 35.4
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 4.6e-27 125.9 262 35.5
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 7.9e-27 125.2 274 36.5
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 3.0e-26 123.2 270 35.6
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 3.0e-26 123.2 253 36.4
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 4.3e-25 119.4 252 36.9
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 9.7e-25 118.2 251 37.1
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 1.6e-24 117.5 248 33.9
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 2.4e-23 113.6 284 32.4
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.5e-22 109.4 248 33.9
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 4.5e-22 109.4 250 36.8
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 7.6e-22 108.6 263 36.1
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 5.0e-21 105.9 267 36.3
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 3.2e-20 103.2 252 34.5
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 4.2e-20 102.8 270 32.6
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 1.2e-19 101.3 266 32.3
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 6.1e-19 99.0 262 33.2
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.0e-18 98.2 262 35.9
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 1.4e-18 97.8 281 33.8
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 1.4e-18 97.8 261 30.3
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 5.1e-18 95.9 285 34.0
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 5.1e-18 95.9 284 33.8
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 8.8e-18 95.1 287 32.1
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 8.8e-18 95.1 286 32.2
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 1.1e-17 94.7 232 33.6
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 1.9e-17 94.0 221 34.4
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 4.3e-17 92.8 250 34.8
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 5.7e-17 92.4 260 31.2
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 5.7e-17 92.4 263 31.9
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 9.7e-17 91.7 277 33.9
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.3e-16 91.3 190 37.4
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 2.2e-16 90.5 275 31.3
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 3.7e-16 89.7 272 32.0
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 4.8e-16 89.4 281 32.0
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 4.8e-16 89.4 255 32.9
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 6.3e-16 89.0 114 45.6
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 1.1e-15 88.2 259 30.9
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 1.4e-15 87.8 303 29.7
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 9.1e-15 85.1 211 35.1
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 3.4e-14 83.2 166 40.4
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 1.0e-13 81.6 280 30.7
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 2.9e-13 80.1 265 32.5
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 5.0e-13 79.3 321 31.5
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 2.5e-12 77.0 274 32.5
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 2.5e-12 77.0 207 30.4
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 7.2e-12 75.5 233 31.3
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 9.4e-12 75.1 245 32.2
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 1.6e-11 74.3 249 30.9
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 2.1e-11 73.9 251 29.5
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 4.7e-11 72.8 257 28.8
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 2.3e-10 70.5 226 29.2
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 2.3e-10 70.5 149 34.9
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 3.0e-10 70.1 350 26.0
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 1.5e-09 67.8 259 27.8
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 7.4e-09 65.5 311 26.7
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 1.3e-08 64.7 283 26.9
Lsat_1_v5_gn_7_2960 Lactuca sativa HOM05D002069 ORTHO05D001421 1.4e-07 61.2 179 31.3
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.8e-07 60.8 84 42.9
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 1.2e-06 58.2 211 28.4
Sed0003454 Sechium edule HOM05D000634 ORTHO05D028992 2.0e-06 57.4 213 28.6
ClCG05G000550 Citrullus lanatus HOM05D000634 ORTHO05D028992 4.5e-06 56.2 232 29.7
AUR62044261 Chenopodium quinoa HOM05D021513 ORTHO05D007257 5.9e-06 55.8 182 28.6


User provided reference genes

Program Settings