Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 6.5e-44 180.3 86 100.0
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 5.3e-22 107.5 90 66.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.9e-19 99.0 89 61.8
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.2e-18 96.3 89 60.7
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 2.6e-16 88.6 87 58.6
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 8.3e-15 83.6 67 64.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.4e-14 82.8 67 59.7
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.4e-14 82.8 84 57.1
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 3.1e-14 81.6 62 64.5
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 4.1e-14 81.3 67 59.7
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 7.0e-14 80.5 67 62.7
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 7.0e-14 80.5 62 64.5
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 9.1e-14 80.1 68 60.3
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.6e-13 79.3 69 59.4
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.7e-13 78.6 69 59.4
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 3.5e-13 78.2 58 65.5
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.5e-13 78.2 68 58.8
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 4.5e-13 77.8 60 66.7
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 4.5e-13 77.8 48 79.2
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.9e-13 77.4 78 59.0
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.9e-13 77.4 58 67.2
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.9e-13 77.4 62 62.9
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.9e-13 77.4 62 62.9
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 5.9e-13 77.4 76 50.0
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.0e-12 76.6 57 66.7
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 1.3e-12 76.3 57 61.4
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.3e-12 76.3 66 57.6
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.3e-12 75.5 61 59.0
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.3e-12 75.5 64 59.4
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 2.3e-12 75.5 60 65.0
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.9e-12 75.1 60 60.0
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 5.0e-12 74.3 69 59.4
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 6.6e-12 73.9 59 62.7
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.1e-11 73.2 73 54.8
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.1e-11 73.2 45 75.6
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.5e-11 72.8 57 61.4
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.5e-11 72.0 72 54.2
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.5e-11 72.0 66 54.5
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 3.3e-11 71.6 58 62.1
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 7.2e-11 70.5 57 57.9
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 7.2e-11 70.5 61 57.4
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 7.2e-11 70.5 62 61.3
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.2e-10 69.7 66 53.0
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.6e-10 69.3 70 52.9
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 2.1e-10 68.9 59 62.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.6e-10 68.2 55 60.0
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 6.1e-10 67.4 57 56.1
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.0e-09 66.6 50 64.0
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.4e-09 66.2 71 47.9
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.8e-09 65.9 67 49.3
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.8e-09 65.9 54 53.7
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 2.3e-09 65.5 54 51.9
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.0e-09 65.1 59 55.9
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 3.0e-09 65.1 66 51.5
MD01G1084100 Malus domestica HOM05D014299 ORTHO05D017012 5.2e-09 64.3 51 66.7
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 6.8e-09 63.9 71 46.5
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 6.8e-09 63.9 71 46.5
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.2e-08 63.2 53 58.5
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.5e-08 62.8 67 49.3
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.0e-08 62.4 53 56.6
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.4e-08 61.6 69 46.4
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 4.4e-08 61.2 39 66.7
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 4.4e-08 61.2 52 50.0
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 4.4e-08 61.2 64 51.6
Sopen05g028970 Solanum pennellii HOM05D003086 ORTHO05D003347 4.4e-08 61.2 39 69.2
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 5.7e-08 60.8 78 47.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 5.7e-08 60.8 74 50.0
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 5.7e-08 60.8 73 50.7
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 5.7e-08 60.8 55 56.4
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 7.5e-08 60.5 69 46.4
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 7.5e-08 60.5 74 50.0
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 7.5e-08 60.5 53 60.4
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 7.5e-08 60.5 53 54.7
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 9.8e-08 60.1 57 61.4
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 9.8e-08 60.1 57 49.1
Prupe.2G191800 Prunus persica HOM05D014299 ORTHO05D017012 9.8e-08 60.1 49 71.4
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.3e-07 59.7 71 49.3
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.3e-07 59.7 70 45.7
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.3e-07 59.7 70 45.7
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 1.7e-07 59.3 53 56.6
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.7e-07 59.3 37 70.3
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 2.2e-07 58.9 78 46.2
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.2e-07 58.9 78 46.2
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.2e-07 58.9 61 49.2
Gorai.012G097900 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.2e-07 58.9 34 76.5
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.8e-07 58.5 65 49.2
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.8e-07 58.5 64 48.4
Ca_16727_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.7e-07 58.2 58 50.0
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 3.7e-07 58.2 67 46.3
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 4.9e-07 57.8 75 44.0
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 6.3e-07 57.4 56 50.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 6.3e-07 57.4 69 46.4
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 6.3e-07 57.4 48 56.2
FAN03G1568 Fragaria x ananassa HOM05D014299 ORTHO05D017012 6.3e-07 57.4 73 52.1
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.3e-07 57.4 67 43.3
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.3e-07 57.4 67 43.3
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.3e-07 57.4 67 43.3
Psat4g005000 Pisum sativum HOM05D003086 ORTHO05D003347 6.3e-07 57.4 68 44.1
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 8.3e-07 57.0 59 50.8
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 1.1e-06 56.6 76 42.1
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 1.1e-06 56.6 76 42.1
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.1e-06 56.6 79 46.8
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 1.1e-06 56.6 75 42.7
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.1e-06 56.6 75 42.7
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 1.4e-06 56.2 65 50.8
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 1.4e-06 56.2 51 56.9
FAN10G2971 Fragaria x ananassa HOM05D014299 ORTHO05D017012 1.4e-06 56.2 73 52.1
FAN10G3583 Fragaria x ananassa HOM05D014299 ORTHO05D017012 1.4e-06 56.2 73 52.1
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 68 44.1
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 1.4e-06 56.2 55 47.3
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.4e-06 56.2 66 45.5
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.8e-06 55.8 78 44.9
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 1.8e-06 55.8 72 43.1
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.8e-06 55.8 70 42.9
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.8e-06 55.8 53 50.9
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 68 47.1
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 79 46.8
FvH4_7g16950 Fragaria vesca HOM05D014299 ORTHO05D017012 2.4e-06 55.5 73 52.1
FAN01G2858 Fragaria x ananassa HOM05D014299 ORTHO05D017012 2.4e-06 55.5 73 52.1
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.4e-06 55.5 65 49.2
TPR.G33614 Trifolium pratense HOM05D003086 ORTHO05D003347 3.1e-06 55.1 60 51.7
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 4.1e-06 54.7 60 50.0
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 4.1e-06 54.7 60 50.0
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 4.1e-06 54.7 60 50.0
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 4.1e-06 54.7 60 50.0
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.1e-06 54.7 56 50.0
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.1e-06 54.7 56 50.0
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.1e-06 54.7 65 49.2
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.1e-06 54.7 65 49.2
Hma1.2p1_0415F.1_g147960 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 4.1e-06 54.7 51 49.0
Medtr3g491900 Medicago truncatula HOM05D003086 ORTHO05D003347 4.1e-06 54.7 36 63.9
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.1e-06 54.7 52 51.9
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 5.4e-06 54.3 42 64.3
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 5.4e-06 54.3 61 49.2
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 5.4e-06 54.3 61 49.2
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.4e-06 54.3 67 41.8
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 5.4e-06 54.3 71 43.7
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 5.4e-06 54.3 70 40.0
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 5.4e-06 54.3 56 51.8
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 5.4e-06 54.3 74 43.2
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 7.0e-06 53.9 78 41.0
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 7.0e-06 53.9 66 43.9
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 7.0e-06 53.9 66 42.4
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 7.0e-06 53.9 66 43.9
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 7.0e-06 53.9 66 43.9
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 7.0e-06 53.9 66 43.9
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 7.0e-06 53.9 66 43.9
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 7.0e-06 53.9 72 43.1
FAN06G3413 Fragaria x ananassa HOM05D014299 ORTHO05D017012 7.0e-06 53.9 73 50.7
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 7.0e-06 53.9 56 48.2
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 7.0e-06 53.9 77 46.8
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 9.2e-06 53.5 53 52.8
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 9.2e-06 53.5 55 43.6
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 9.2e-06 53.5 42 57.1
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 9.2e-06 53.5 56 53.6


User provided reference genes

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