Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 2.6e-71 272.3 176 100.0
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 1.3e-38 163.7 122 71.3
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 4.1e-37 158.7 127 70.1
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 1.0e-35 154.1 124 66.9
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 1.3e-14 84.0 109 50.5
TPR.G7659 Trifolium pratense HOM05D007041 ORTHO05D008036 2.2e-14 83.2 119 47.1
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.0e-11 74.3 111 45.0
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.8e-11 73.6 125 43.2
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 5.1e-11 72.0 120 40.0
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 8.7e-11 71.2 107 35.5
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 8.7e-11 71.2 49 63.3
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 8.7e-11 71.2 49 63.3
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 3.3e-10 69.3 126 38.1
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.3e-10 68.9 49 61.2
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.6e-10 68.6 49 61.2
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.6e-10 68.6 49 61.2
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 5.6e-10 68.6 105 37.1
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 9.6e-10 67.8 49 65.3
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 9.6e-10 67.8 111 36.0
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.3e-09 67.4 122 33.6
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 2.1e-09 66.6 93 40.9
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 2.8e-09 66.2 74 48.6
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.8e-09 66.2 118 40.7
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.7e-09 65.9 100 40.0
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.7e-09 65.9 123 39.0
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 1.1e-08 64.3 94 55.3
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.1e-08 64.3 40 65.0
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 1.4e-08 63.9 44 70.5
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 1.4e-08 63.9 119 36.1
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.4e-08 63.9 120 34.2
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.8e-08 63.5 40 70.0
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.8e-08 63.5 125 36.8
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 2.4e-08 63.2 37 73.0
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.4e-08 63.2 129 34.1
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.4e-08 63.2 122 35.2
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 2.4e-08 63.2 119 34.5
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.4e-08 63.2 108 38.0
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 3.1e-08 62.8 94 45.7
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 4.0e-08 62.4 110 37.3
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.0e-08 62.4 40 70.0
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 4.0e-08 62.4 127 39.4
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.9e-08 61.6 93 40.9
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 6.9e-08 61.6 93 40.9
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 6.9e-08 61.6 40 70.0
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.9e-08 61.6 122 32.0
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.9e-08 61.6 106 34.9
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 9.0e-08 61.2 115 35.7
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 9.0e-08 61.2 48 58.3
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.2e-07 60.8 80 40.0
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.2e-07 60.8 122 32.8
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 1.2e-07 60.8 109 36.7
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.2e-07 60.8 39 64.1
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 1.5e-07 60.5 39 66.7
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 2.0e-07 60.1 38 65.8
Lalb_Chr18g0044291 Lupinus albus HOM05D007041 ORTHO05D008036 2.0e-07 60.1 89 42.7
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 2.0e-07 60.1 33 66.7
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 2.0e-07 60.1 124 35.5
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 2.6e-07 59.7 36 69.4
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 2.6e-07 59.7 36 69.4
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 2.6e-07 59.7 36 69.4
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 2.6e-07 59.7 36 69.4
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 2.6e-07 59.7 36 69.4
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 2.6e-07 59.7 36 69.4
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.6e-07 59.7 45 55.6
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 3.4e-07 59.3 36 69.4
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 3.4e-07 59.3 36 69.4
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 3.4e-07 59.3 43 58.1
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.4e-07 59.3 35 68.6
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 3.4e-07 59.3 36 69.4
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 4.5e-07 58.9 72 44.4
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 5.8e-07 58.5 42 61.9
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 5.8e-07 58.5 92 37.0
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 5.8e-07 58.5 92 35.9
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 7.6e-07 58.2 96 35.4
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 7.6e-07 58.2 52 48.1
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 7.6e-07 58.2 103 36.9
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 9.9e-07 57.8 114 38.6
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 9.9e-07 57.8 42 61.9
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 9.9e-07 57.8 107 38.3
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 1.7e-06 57.0 113 39.8
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 1.7e-06 57.0 43 62.8
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.2e-06 56.6 49 51.0
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.2e-06 56.6 47 53.2
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 2.2e-06 56.6 31 71.0
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.8e-06 55.8 39 64.1
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.8e-06 55.8 33 72.7
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 3.8e-06 55.8 33 72.7
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.9e-06 55.5 39 56.4
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 4.9e-06 55.5 32 68.8
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 4.9e-06 55.5 40 52.5


User provided reference genes

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