Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 1.2e-164 583.6 400 100.0
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 1.2e-97 360.9 366 68.9
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 1.1e-96 357.8 377 66.6
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 4.6e-76 289.3 371 63.3
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 1.5e-74 284.3 369 60.4
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 1.6e-73 280.8 361 68.4
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 2.8e-73 280.0 363 66.4
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 7.1e-69 265.4 375 60.3
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 7.9e-68 261.9 372 60.5
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 2.3e-67 260.4 358 64.0
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 1.5e-66 257.7 361 58.7
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 1.5e-55 221.1 270 51.1
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 3.8e-54 216.5 271 52.8
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 3.8e-54 216.5 184 66.8
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 5.0e-54 216.1 268 50.7
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 2.5e-53 213.8 287 47.4
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 9.4e-53 211.8 276 48.6
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 1.2e-52 211.5 266 49.6
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 4.6e-52 209.5 187 64.7
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 7.9e-52 208.8 283 48.4
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 1.4e-51 208.0 284 47.9
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 6.7e-51 205.7 265 50.2
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 6.7e-51 205.7 276 47.8
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 4.4e-50 203.0 379 45.9
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 7.4e-50 202.2 291 47.1
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 7.4e-50 202.2 348 52.6
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 9.7e-50 201.8 269 51.7
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 2.2e-49 200.7 263 52.5
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 1.1e-48 198.4 275 46.9
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 1.4e-48 198.0 276 46.7
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 1.4e-48 198.0 270 47.8
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 5.3e-48 196.1 184 58.7
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 6.9e-48 195.7 276 46.4
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 6.9e-48 195.7 262 48.5
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 9.1e-48 195.3 268 48.9
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 9.1e-48 195.3 265 48.7
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 1.2e-47 194.9 370 45.7
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 1.2e-47 194.9 286 46.5
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 1.5e-47 194.5 278 46.0
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 2.0e-47 194.1 346 48.0
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 2.0e-47 194.1 184 58.2
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 2.6e-47 193.7 186 59.1
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 4.5e-47 193.0 275 48.4
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 4.5e-47 193.0 359 46.5
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 5.9e-47 192.6 268 50.7
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 7.7e-47 192.2 277 47.7
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 7.7e-47 192.2 277 47.7
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 1.0e-46 191.8 283 45.9
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 1.3e-46 191.4 370 44.3
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 3.8e-46 189.9 287 46.3
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 5.0e-46 189.5 199 55.8
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 5.0e-46 189.5 278 48.2
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 8.5e-46 188.7 159 64.2
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 1.4e-45 188.0 259 47.9
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 1.9e-45 187.6 183 56.8
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 1.9e-45 187.6 268 50.4
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 3.2e-45 186.8 369 45.3
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 7.2e-45 185.7 265 50.6
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 7.2e-45 185.7 269 45.7
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 7.2e-45 185.7 269 45.7
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 1.2e-44 184.9 295 43.4
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 1.6e-44 184.5 347 50.7
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 2.1e-44 184.1 280 43.2
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 4.7e-44 183.0 277 47.7
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 1.0e-43 181.8 160 63.1
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 1.8e-43 181.0 173 58.4
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 6.7e-43 179.1 172 58.1
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 1.1e-42 178.3 170 59.4
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 2.0e-42 177.6 269 46.8
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 5.7e-42 176.0 169 59.2
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 5.7e-42 176.0 169 55.6
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 7.4e-42 175.6 277 51.3
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 7.4e-42 175.6 274 49.6
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 7.4e-42 175.6 258 45.7
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 7.4e-42 175.6 169 56.2
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 7.4e-42 175.6 180 56.1
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 9.7e-42 175.3 174 56.9
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 1.7e-41 174.5 277 43.0
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 2.2e-41 174.1 398 42.2
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 3.7e-41 173.3 184 54.3
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 4.8e-41 172.9 170 58.2
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 8.2e-41 172.2 169 55.6
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 1.1e-40 171.8 170 55.3
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 1.8e-40 171.0 182 52.7
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 5.3e-40 169.5 193 51.3
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 7.0e-40 169.1 266 42.9
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 1.2e-39 168.3 186 53.2
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 1.6e-39 167.9 159 58.5
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 5.9e-39 166.0 264 48.5
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 1.0e-38 165.2 175 55.4
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 1.0e-38 165.2 172 51.7
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 2.9e-38 163.7 167 55.7
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 2.9e-38 163.7 185 48.6
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 3.8e-38 163.3 160 55.6
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 1.1e-37 161.8 185 48.6
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 2.5e-37 160.6 179 53.6
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 4.2e-37 159.8 173 53.8
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 5.2e-35 152.9 178 48.3
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 1.2e-34 151.8 204 46.1
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 1.5e-34 151.4 295 39.3
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 9.7e-34 148.7 156 57.7
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 4.8e-33 146.4 169 53.3
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 2.4e-32 144.1 172 49.4
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 2.0e-31 141.0 178 48.9
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 3.8e-30 136.7 181 42.5
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 3.2e-29 133.7 180 44.4
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 8.8e-27 125.6 180 41.1
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 9.8e-26 122.1 176 41.5
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 2.8e-25 120.6 186 41.9
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 1.6e-23 114.8 194 36.1
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 2.0e-23 114.4 168 44.6
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 1.6e-20 104.8 126 53.2
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 7.8e-15 85.9 49 83.7
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.8e-11 74.7 77 55.8
Cre19.g750397 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D008664 2.0e-07 61.2 137 31.4
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 1.0e-06 58.9 141 34.0


User provided reference genes

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