Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 0.0e+00 1636.7 822 100.0
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 0.0e+00 1529.2 819 92.4
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1451.8 827 88.1
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 0.0e+00 1315.4 824 79.0
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 0.0e+00 1258.4 825 76.4
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 0.0e+00 1236.9 821 75.0
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1202.2 819 72.3
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1198.3 827 73.3
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1193.7 819 71.7
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 0.0e+00 1186.8 827 72.2
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 0.0e+00 1158.7 822 69.8
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1157.5 831 69.7
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1155.2 828 69.7
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 0.0e+00 1153.3 783 72.2
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1149.0 827 71.2
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 0.0e+00 1142.1 725 78.8
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 0.0e+00 1127.9 806 69.5
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 9.4e-310 1066.6 738 71.3
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 1.3e-306 1056.2 811 65.7
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 4.9e-306 1054.3 825 64.2
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 7.0e-305 1050.4 835 64.1
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.5e-299 1032.7 810 64.9
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.6e-296 1022.7 711 71.0
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 7.5e-291 1003.8 682 72.3
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.3e-287 992.3 838 59.9
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 6.6e-287 990.7 818 59.9
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 2.5e-286 988.8 835 60.5
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 4.3e-286 988.0 830 61.2
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 3.1e-284 981.9 813 59.9
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.5e-283 979.5 846 58.3
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 4.9e-282 974.5 821 60.5
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 9.2e-281 970.3 834 58.5
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 7.8e-280 967.2 812 59.7
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.7e-279 966.1 832 58.3
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 3.1e-276 955.3 872 56.1
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 4.0e-276 954.9 834 58.0
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 5.8e-275 951.0 841 57.9
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 7.1e-273 944.1 827 57.9
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 2.1e-272 942.6 835 58.0
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 2.7e-272 942.2 769 60.9
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.3e-271 939.1 825 57.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 6.6e-271 937.6 796 58.7
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.5e-270 936.4 821 58.0
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.9e-270 936.0 825 57.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.1e-269 932.6 744 62.2
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 5.8e-267 924.5 818 57.6
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 7.6e-267 924.1 791 58.3
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 6.4e-266 921.0 834 57.0
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.4e-265 919.8 841 56.2
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.1e-264 916.0 841 55.8
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.5e-264 915.2 832 56.0
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.9e-263 911.8 826 56.8
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.1e-262 910.2 803 57.5
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 6.2e-261 904.4 782 58.8
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.1e-260 903.7 841 56.4
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-260 902.5 873 54.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 4.0e-260 901.7 835 55.9
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.2e-259 900.2 836 56.7
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.0e-259 899.4 806 56.7
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.2e-258 896.0 834 55.6
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.4e-258 894.4 825 55.4
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.9e-254 882.9 799 57.4
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 5.6e-254 881.3 770 58.1
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 5.6e-254 881.3 801 55.7
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 1.3e-253 880.2 815 56.0
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.8e-252 876.3 817 53.9
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 6.9e-252 874.4 772 58.3
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 2.0e-251 872.8 829 54.4
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.7e-250 869.8 827 53.8
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 2.9e-250 869.0 827 53.7
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.1e-249 867.1 822 54.3
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.4e-249 866.7 830 54.5
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 7.1e-249 864.4 828 53.9
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.1e-248 862.8 841 53.5
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 2.7e-248 862.4 823 53.9
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 6.0e-248 861.3 757 57.5
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 7.9e-248 860.9 721 60.2
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 3.9e-247 858.6 841 53.3
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 1.5e-246 856.7 831 53.5
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.9e-246 856.3 812 53.6
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 3.3e-246 855.5 793 54.1
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 9.0e-244 847.4 850 53.3
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 2.6e-243 845.9 787 53.9
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 2.6e-243 845.9 785 55.2
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 3.4e-243 845.5 832 54.6
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.3e-242 843.6 683 61.3
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 1.1e-241 840.5 823 52.4
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.1e-241 840.5 824 53.5
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 2.5e-241 839.3 824 52.3
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 2.5e-241 839.3 824 52.3
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 7.2e-241 837.8 791 53.9
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 2.1e-240 836.3 823 51.9
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.0e-239 833.9 778 54.8
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.3e-239 833.6 799 54.6
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 3.7e-237 825.5 825 52.0
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 3.1e-236 822.4 791 53.2
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.2e-232 810.4 848 50.4
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 7.9e-232 807.7 797 52.2
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.4e-231 807.0 774 53.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.8e-231 806.6 772 53.5
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 2.3e-231 806.2 848 49.9
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 5.1e-231 805.1 786 53.2
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 2.8e-229 799.3 820 52.4
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.4e-225 786.9 689 57.8
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.9e-225 786.6 816 52.3
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.3e-218 763.8 762 53.5
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.2e-218 763.1 841 49.7
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.1e-209 734.2 819 46.9
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 6.5e-202 708.4 833 45.6
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 8.6e-202 708.0 895 44.9
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.6e-198 696.4 655 55.4
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.4e-196 689.9 814 45.1
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.1e-192 676.8 515 63.3
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 5.8e-190 668.7 833 46.0
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.2e-188 662.9 668 51.5
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 4.1e-188 662.5 911 41.9
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.5e-187 659.4 766 45.6
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 4.6e-187 659.1 615 54.8
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 6.4e-181 638.6 827 43.5
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 5.4e-180 635.6 343 92.7
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 8.3e-173 611.7 372 82.5
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.1e-171 607.1 787 41.9
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.8e-167 594.0 712 46.2
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 8.9e-167 591.7 715 46.2
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 9.2e-164 581.6 688 45.6
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.6e-155 552.7 721 43.1
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 4.6e-139 499.6 385 62.6
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.1e-135 486.9 444 55.6
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 7.1e-132 475.7 343 67.9
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 6.3e-128 462.6 722 38.1
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 3.2e-124 450.3 531 44.8
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.7e-114 416.0 435 51.0
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 3.1e-103 380.6 579 38.9
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.8e-95 354.8 323 56.0
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 5.9e-94 349.7 887 28.2
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.3e-93 348.6 766 31.2
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 4.2e-84 317.0 462 42.0
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 6.1e-83 313.2 352 42.6
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.6e-81 307.8 461 40.1
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 4.1e-71 273.9 291 48.1
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.5e-68 265.4 512 31.8
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.6e-67 261.9 297 50.2
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.7e-56 225.3 196 58.7
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-52 212.6 176 64.2
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 5.6e-52 210.3 182 60.4
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.2e-30 139.4 120 58.3
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 3.1e-26 124.8 127 42.5
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.0e-26 124.4 143 48.3
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.2e-22 112.8 118 51.7
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.3e-20 104.4 87 67.8
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 1.5e-17 95.9 121 47.1
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 1.1e-15 89.7 52 75.0
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.9e-14 83.6 113 33.6
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 3.7e-11 74.7 61 52.5
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 1.4e-10 72.8 88 43.2
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 4.1e-10 71.2 56 60.7
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 7.7e-09 67.0 63 52.4
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.0e-08 64.3 64 50.0
arahy.Tifrunner.gnm1.ann1.F124GG Arachis hypogaea HOM05D033213 ORTHO05D086251 7.9e-06 57.0 38 71.1


User provided reference genes

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