Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 4.6e-36 154.1 80 100.0
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.7e-30 135.6 80 86.2
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 9.4e-29 129.8 80 80.0
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 1.2e-28 129.4 80 80.0
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.6e-28 129.0 80 80.0
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 2.1e-28 128.6 80 80.0
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 2.7e-28 128.3 80 80.0
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 1.1e-26 122.9 80 77.5
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 1.1e-26 122.9 135 57.0
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.0e-23 112.1 81 70.4
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 2.5e-21 105.1 72 75.0
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 3.2e-21 104.8 77 67.5
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 9.4e-21 103.2 80 66.2
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 9.4e-21 103.2 80 66.2
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 2.1e-20 102.1 78 60.3
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 2.7e-20 101.7 81 65.4
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.6e-20 101.3 78 64.1
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 3.6e-20 101.3 72 65.3
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.7e-20 100.9 67 73.1
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 6.1e-20 100.5 78 65.4
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.0e-19 99.8 80 65.0
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 2.3e-19 98.6 80 65.0
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 3.9e-19 97.8 78 61.5
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 3.9e-19 97.8 77 64.9
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 3.9e-19 97.8 79 63.3
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.9e-19 97.8 79 63.3
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.9e-19 97.8 79 63.3
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.9e-19 97.8 79 63.3
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 5.1e-19 97.4 73 64.4
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 5.1e-19 97.4 73 65.8
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 6.7e-19 97.1 73 65.8
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 1.5e-18 95.9 72 63.9
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 62.0
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.0e-18 95.5 78 60.3
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-18 95.1 73 61.6
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.6e-18 95.1 78 61.5
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 2.6e-18 95.1 80 62.5
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 5.7e-18 94.0 79 60.8
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 7.4e-18 93.6 60 73.3
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 9.7e-18 93.2 66 65.2
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 1.7e-17 92.4 61 72.1
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 2.8e-17 91.7 71 60.6
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 2.8e-17 91.7 72 62.5
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 2.8e-17 91.7 75 62.7
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 4.8e-17 90.9 79 59.5
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 4.8e-17 90.9 58 70.7
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 8.2e-17 90.1 69 65.2
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 8.2e-17 90.1 58 72.4
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 2.4e-16 88.6 67 62.7
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 3.1e-16 88.2 73 58.9
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 3.1e-16 88.2 69 63.8
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 5.3e-16 87.4 56 71.4
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 7.0e-16 87.0 63 66.7
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 7.0e-16 87.0 61 68.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 9.1e-16 86.7 72 56.9
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 9.1e-16 86.7 72 55.6
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 9.1e-16 86.7 79 57.0
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.2e-15 86.3 60 66.7
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 1.2e-15 86.3 65 63.1
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 2.0e-15 85.5 64 60.9
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 2.0e-15 85.5 58 65.5
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 3.5e-15 84.7 60 63.3
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 3.5e-15 84.7 68 61.8
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 5.9e-15 84.0 58 65.5
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 5.9e-15 84.0 79 55.7
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 7.7e-15 83.6 68 55.9
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 1.3e-14 82.8 67 59.7
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 1.3e-14 82.8 63 63.5
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 1.7e-14 82.4 79 54.4
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 2.2e-14 82.0 58 65.5
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 2.9e-14 81.6 71 52.1
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 3.8e-14 81.3 60 61.7
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 6.5e-14 80.5 68 58.8
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 8.5e-14 80.1 58 62.1
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-13 79.7 115 43.5
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.5e-13 79.3 58 62.1
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 2.5e-13 78.6 57 61.4
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 2.5e-13 78.6 57 61.4
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 2.5e-13 78.6 57 61.4
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 2.5e-13 78.6 57 61.4
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 2.5e-13 78.6 57 61.4
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 2.5e-13 78.6 72 55.6
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 4.2e-13 77.8 81 51.9
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 5.5e-13 77.4 69 49.3
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.2e-12 76.3 109 45.0
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 4.7e-12 74.3 80 50.0
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 1.8e-11 72.4 72 52.8
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 4.0e-11 71.2 62 54.8
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 8.8e-11 70.1 39 79.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.4e-10 67.8 50 60.0
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 4.4e-10 67.8 38 81.6
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 7.5e-10 67.0 62 53.2
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.3e-09 63.9 42 71.4
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.2e-09 63.5 80 46.2
Glyma.07G072000 Glycine max HOM05D007705 ORTHO05D009720 5.9e-07 57.4 35 77.1


User provided reference genes

Program Settings