Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 5.4e-184 647.5 326 100.0
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 7.4e-165 583.9 326 89.6
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 4.5e-162 574.7 314 92.4
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 6.3e-148 527.7 329 80.9
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 2.4e-147 525.8 329 80.5
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.2e-146 523.5 327 80.4
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.4e-144 516.5 326 77.9
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.8e-142 509.6 326 78.2
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 7.4e-141 504.2 324 78.4
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.3e-140 503.4 330 77.6
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 5.2e-134 481.5 324 73.8
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.5e-133 479.9 324 73.5
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 2.4e-131 472.6 323 71.5
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.2e-130 470.3 322 71.1
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.6e-130 469.9 320 74.1
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.6e-130 469.9 319 72.1
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 5.0e-129 464.9 322 72.4
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 6.5e-129 464.5 322 72.4
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 6.5e-129 464.5 317 75.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.5e-128 463.4 323 70.6
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 3.2e-128 462.2 322 73.3
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 2.1e-127 459.5 318 72.3
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.1e-127 459.5 326 70.6
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.7e-127 459.1 322 70.2
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.6e-127 458.8 318 72.3
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.7e-127 458.4 318 72.3
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.7e-127 458.4 318 72.0
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 8.0e-127 457.6 322 70.2
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 8.0e-127 457.6 318 71.7
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.0e-126 457.2 322 69.9
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.4e-126 456.8 356 66.9
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.8e-126 456.4 318 72.0
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.8e-126 456.4 323 71.2
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.0e-126 455.7 322 69.3
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 3.0e-126 455.7 318 71.7
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 4.0e-126 455.3 322 70.5
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.2e-126 454.9 325 71.4
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 5.2e-126 454.9 323 71.5
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 6.8e-126 454.5 323 69.0
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 1.2e-125 453.8 319 73.0
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.0e-125 453.0 324 70.7
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.0e-125 453.0 324 71.6
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.4e-125 452.2 318 71.4
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 3.4e-125 452.2 324 71.6
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 4.4e-125 451.8 324 72.5
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 7.5e-125 451.1 318 70.4
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.7e-124 449.9 320 70.6
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 3.7e-124 448.7 316 69.6
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 6.3e-124 448.0 318 67.9
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.4e-123 446.8 322 66.8
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.1e-123 445.7 316 72.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.2e-122 443.7 325 68.3
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.6e-122 443.4 322 70.2
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 2.7e-122 442.6 321 68.2
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 5.9e-122 441.4 323 67.5
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 7.7e-122 441.0 322 68.9
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.0e-121 440.7 316 68.7
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.0e-121 440.7 322 67.1
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.0e-121 440.7 325 67.1
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.3e-121 440.3 316 71.8
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-121 440.3 320 69.7
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 2.9e-121 439.1 326 66.9
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 6.5e-121 438.0 324 68.2
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 8.6e-121 437.6 323 68.4
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.1e-120 437.2 317 67.2
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.5e-120 436.0 321 66.4
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.5e-120 436.0 336 65.8
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 3.2e-120 435.6 319 69.0
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 7.2e-120 434.5 327 67.6
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 3.6e-119 432.2 314 66.9
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.6e-119 432.2 323 67.2
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.0e-118 430.6 323 66.9
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.3e-118 429.5 324 65.7
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 4.0e-118 428.7 322 66.5
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 3.4e-117 425.6 352 63.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 3.4e-117 425.6 317 67.2
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.4e-117 425.2 322 67.4
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 4.4e-117 425.2 374 59.6
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 3.7e-116 422.2 322 65.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 4.9e-116 421.8 324 66.0
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 5.4e-115 418.3 326 66.6
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.2e-114 417.2 326 66.6
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.2e-114 417.2 326 66.3
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.6e-114 416.8 322 65.5
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.0e-113 414.1 326 65.6
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 6.6e-113 411.4 344 62.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.9e-112 409.8 317 65.0
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.3e-112 409.1 318 63.5
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.1e-111 406.4 326 66.0
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 4.7e-111 405.2 338 63.3
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.3e-110 402.9 286 69.6
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.0e-109 399.8 283 71.7
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 2.9e-108 396.0 284 68.0
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.4e-107 393.7 302 67.9
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 5.4e-107 391.7 257 75.9
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 7.8e-106 387.9 319 62.1
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 6.2e-103 378.3 280 68.9
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.8e-102 376.7 246 74.8
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.2e-101 374.0 323 60.4
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-98 363.2 240 76.7
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-94 350.1 230 77.0
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 7.5e-93 344.7 317 57.1
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 3.7e-92 342.4 238 70.6
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.9e-88 330.1 323 51.7
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.4e-86 323.9 237 66.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-86 323.6 237 70.0
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 4.4e-85 318.9 203 77.3
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.5e-80 303.9 243 63.0
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.5e-80 303.1 193 75.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.8e-78 297.0 237 62.9
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 8.4e-76 288.1 237 64.6
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.9e-75 287.0 319 49.8
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 7.1e-75 285.0 240 65.0
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 2.0e-69 266.9 308 48.1
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.4e-62 244.2 133 91.0
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 3.1e-62 243.0 196 64.3
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.2e-58 231.1 184 65.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 7.4e-48 195.3 322 39.8
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 9.7e-48 194.9 314 40.4
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.1e-40 171.4 117 73.5
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 8.2e-39 165.2 326 36.2
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 4.1e-38 162.9 111 71.2
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 4.1e-38 162.9 111 71.2
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 4.1e-38 162.9 111 71.2
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 2.9e-36 156.8 110 72.7
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 7.2e-35 152.1 106 73.6
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.3e-33 147.1 82 82.9
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.0e-32 144.1 125 56.8
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 7.4e-32 142.1 128 57.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 9.7e-32 141.7 90 75.6
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.1e-30 138.3 84 86.9
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.4e-27 127.9 85 75.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 8.2e-23 112.1 94 67.0
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-16 90.5 80 56.2
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 6.3e-15 85.9 57 71.9
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-14 85.1 53 75.5
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 4.7e-10 69.7 65 53.8
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 4.7e-10 69.7 65 53.8
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 1.5e-08 64.7 44 77.3
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 1.5e-08 64.7 43 74.4


User provided reference genes

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