Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.6e-123 446.0 222 100.0
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 3.1e-106 388.7 223 87.0
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.0e-104 383.6 222 86.0
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 2.2e-104 382.5 222 86.0
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 1.0e-96 357.1 218 83.0
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 2.0e-92 342.8 226 77.0
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 1.7e-91 339.7 250 73.6
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 4.8e-91 338.2 222 77.5
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 9.1e-90 334.0 220 75.0
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.9e-88 328.9 224 75.0
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 2.9e-88 328.9 224 75.4
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.0e-85 320.5 217 74.7
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 2.3e-85 319.3 223 76.7
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 7.4e-84 314.3 176 85.2
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 5.3e-82 308.1 195 75.9
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 9.1e-82 307.4 192 75.5
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 5.9e-81 304.7 228 68.4
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 2.9e-80 302.4 228 67.5
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 3.8e-80 302.0 196 73.5
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 4.2e-79 298.5 222 67.6
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 5.5e-79 298.1 226 68.6
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 6.1e-78 294.7 194 72.2
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.0e-77 293.9 225 66.7
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.4e-77 293.5 225 67.6
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.4e-77 293.5 228 64.9
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.3e-77 292.7 226 65.5
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 8.8e-77 290.8 184 73.4
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 1.5e-76 290.0 228 62.7
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.5e-76 290.0 226 65.9
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.0e-76 289.7 187 73.3
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.6e-76 289.3 187 73.3
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 5.7e-76 288.1 198 69.2
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 7.5e-76 287.7 201 72.1
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 9.7e-76 287.3 198 69.2
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.7e-75 286.6 214 65.0
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 2.8e-75 285.8 224 66.1
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 2.8e-75 285.8 216 65.7
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 2.8e-75 285.8 197 68.0
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 3.7e-75 285.4 223 64.6
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 6.3e-75 284.6 197 70.1
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.1e-74 283.9 228 64.5
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.4e-74 283.5 195 70.8
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.8e-74 283.1 191 70.2
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.8e-74 283.1 176 75.6
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.8e-74 283.1 193 71.5
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 3.1e-74 282.3 231 64.1
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 4.1e-74 282.0 186 72.6
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 5.3e-74 281.6 193 71.0
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 7.0e-74 281.2 204 66.7
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 7.0e-74 281.2 225 64.0
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 9.1e-74 280.8 200 69.5
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.0e-73 279.6 216 67.1
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 5.9e-73 278.1 225 64.4
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.3e-72 276.9 224 63.8
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 2.2e-72 276.2 224 62.1
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 2.9e-72 275.8 224 63.8
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 6.5e-72 274.6 225 62.7
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 8.5e-72 274.2 181 71.3
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 1.1e-71 273.9 219 63.9
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.5e-71 273.5 232 62.1
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 2.5e-71 272.7 207 66.2
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 5.5e-71 271.6 207 68.1
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 7.2e-71 271.2 175 72.6
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 1.2e-70 270.4 208 65.9
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.6e-70 270.0 224 64.7
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 3.6e-70 268.9 206 66.5
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 8.0e-70 267.7 224 64.7
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 8.0e-70 267.7 198 67.2
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.0e-69 267.3 224 64.7
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 1.0e-69 267.3 224 64.3
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 1.0e-69 267.3 204 68.1
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.8e-69 266.5 224 64.3
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 3.0e-69 265.8 225 62.7
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 8.8e-69 264.2 175 74.9
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 8.8e-69 264.2 176 72.2
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 1.5e-68 263.5 185 70.8
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 3.4e-68 262.3 175 73.7
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 4.4e-68 261.9 175 73.7
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 4.4e-68 261.9 173 73.4
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 2.2e-67 259.6 185 70.8
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 2.2e-67 259.6 175 72.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.4e-66 256.9 171 72.5
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 7.0e-66 254.6 226 62.4
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 7.0e-66 254.6 222 62.2
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 2.0e-65 253.1 165 72.1
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 2.0e-65 253.1 165 72.1
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 7.7e-65 251.1 222 56.3
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.7e-64 250.0 222 59.5
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 2.2e-64 249.6 180 66.1
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 2.9e-64 249.2 174 64.9
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.9e-63 246.5 151 76.8
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.1e-62 243.0 153 74.5
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.1e-62 243.0 159 71.1
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 6.1e-62 241.5 178 64.0
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 8.0e-62 241.1 193 62.7
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.6e-60 236.1 152 73.0
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 5.7e-60 235.0 179 62.0
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.3e-59 233.8 210 57.1
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 3.1e-58 229.2 169 63.3
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 5.0e-56 221.9 186 62.4
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.5e-55 220.3 228 53.5
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.2e-54 217.2 232 52.6
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.4e-53 213.8 151 64.9
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 5.7e-52 208.4 172 63.4
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 1.8e-50 203.4 226 49.6
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 8.0e-46 188.0 182 54.4
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 3.1e-45 186.0 167 59.9
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 5.2e-45 185.3 219 48.4
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.2e-44 184.1 193 45.6
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 4.4e-44 182.2 132 71.2
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 2.3e-40 169.9 106 74.5
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 8.6e-40 167.9 105 74.3
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.1e-39 167.5 125 68.8
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.7e-38 162.2 95 81.1
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.4e-37 160.6 121 62.0
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 6.4e-35 151.8 95 76.8
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 4.6e-33 145.6 91 71.4
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 7.3e-31 138.3 116 57.8
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.5e-31 137.9 76 82.9
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 2.6e-28 129.8 107 60.7
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.3e-27 127.5 159 44.0
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 4.1e-26 122.5 83 67.5
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.2e-25 120.9 142 49.3
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.3e-24 117.5 105 59.0
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 4.7e-22 109.0 90 60.0
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 8.9e-21 104.8 90 57.8
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 3.4e-20 102.8 81 59.3
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 1.4e-18 97.4 77 64.9
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 7.1e-18 95.1 55 76.4
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 5.6e-15 85.5 59 69.5
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 9.9e-12 74.7 65 56.9


User provided reference genes

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