Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 1.1e-43 179.5 84 100.0
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 7.5e-21 103.6 53 86.8
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 7.5e-21 103.6 53 86.8
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 7.5e-21 103.6 53 86.8
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 2.9e-20 101.7 50 92.0
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 8.3e-20 100.1 48 93.8
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 1.1e-19 99.8 48 91.7
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-19 99.4 50 90.0
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-19 99.4 50 90.0
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-19 99.4 50 90.0
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-19 99.4 50 90.0
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 2.4e-19 98.6 49 89.8
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 2.4e-19 98.6 48 93.8
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.4e-19 98.6 48 91.7
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 4.1e-19 97.8 50 88.0
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 4.1e-19 97.8 48 91.7
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 4.1e-19 97.8 48 91.7
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 4.1e-19 97.8 48 91.7
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 4.1e-19 97.8 48 91.7
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 5.4e-19 97.4 79 62.0
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 7.1e-19 97.1 48 91.7
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 7.1e-19 97.1 48 91.7
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 7.1e-19 97.1 48 91.7
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 7.1e-19 97.1 48 91.7
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 7.1e-19 97.1 48 91.7
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 7.1e-19 97.1 48 91.7
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 7.1e-19 97.1 48 91.7
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 7.1e-19 97.1 48 91.7
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 9.2e-19 96.7 48 91.7
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 1.6e-18 95.9 48 89.6
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.7e-18 95.1 48 89.6
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 3.5e-18 94.7 50 86.0
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 6.0e-18 94.0 48 89.6
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 1.0e-17 93.2 67 68.7
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 1.0e-17 93.2 48 87.5
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 3.0e-17 91.7 48 87.5
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 5.1e-17 90.9 48 87.5
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 8.6e-17 90.1 48 85.4
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 1.1e-16 89.7 50 84.0
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 1.9e-16 89.0 46 84.8
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 1.9e-16 89.0 50 84.0
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 4.3e-16 87.8 43 90.7
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.8e-15 85.1 48 81.2
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.8e-15 85.1 48 83.3
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 3.6e-15 84.7 50 78.0
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 3.6e-15 84.7 43 88.4
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 6.2e-15 84.0 50 80.0
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 1.1e-14 83.2 48 81.2
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 6.8e-14 80.5 48 79.2
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 1.2e-13 79.7 48 72.9
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 3.4e-13 78.2 48 77.1
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 9.9e-13 76.6 50 68.0
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 4.9e-12 74.3 35 94.3
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.1e-11 73.2 48 68.8
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 2.4e-11 72.0 35 91.4
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 1.6e-10 69.3 42 76.2
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 2.7e-10 68.6 50 68.0
Gohir.D02G066950 Gossypium hirsutum HOM05D049408 ORTHO05D046984 1.0e-09 66.6 62 53.2
Gorai.005G075800 Gossypium raimondii HOM05D049408 ORTHO05D046984 6.6e-09 63.9 62 53.2
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 6.6e-09 63.9 32 87.5
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 3.3e-08 61.6 50 62.0
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 7.3e-08 60.5 26 100.0
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 3.6e-07 58.2 28 92.9
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 8.1e-07 57.0 27 88.9


User provided reference genes

Program Settings