Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 3.0e-257 891.3 446 100.0
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.0e-241 839.7 446 93.9
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.6e-226 789.3 434 89.6
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 4.6e-226 787.7 438 89.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.1e-215 752.3 434 84.1
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 6.2e-215 750.7 434 83.9
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 9.0e-214 746.9 434 83.9
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 4.8e-199 698.0 436 79.4
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 4.1e-198 694.9 433 76.2
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 2.9e-196 688.7 435 78.4
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 7.2e-195 684.1 439 73.1
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.4e-193 679.9 440 73.6
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.4e-193 679.9 433 74.4
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 9.7e-192 673.7 437 73.7
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 4.8e-191 671.4 433 73.7
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 6.3e-191 671.0 441 73.0
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.8e-190 669.5 432 74.3
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 4.1e-190 668.3 433 72.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 4.1e-190 668.3 433 73.2
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 7.0e-190 667.5 433 73.0
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 3.5e-189 665.2 433 72.7
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 5.9e-189 664.5 440 73.9
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 5.9e-189 664.5 441 73.0
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 5.9e-189 664.5 440 71.6
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.0e-188 663.7 433 72.7
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.3e-188 663.3 441 72.8
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.3e-188 663.3 431 73.1
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 3.8e-188 661.8 439 72.7
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 8.5e-188 660.6 441 72.3
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 1.4e-187 659.8 433 73.0
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.9e-187 659.4 439 70.8
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 2.7e-186 655.6 440 72.0
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 6.1e-186 654.4 432 71.8
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 7.4e-184 647.5 440 71.6
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 8.2e-183 644.0 439 69.7
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 5.3e-182 641.3 433 68.8
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.2e-181 640.2 439 68.3
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.6e-181 639.0 432 71.8
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 3.5e-181 638.6 433 70.0
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.5e-181 638.6 432 71.8
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 3.5e-181 638.6 433 68.6
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 5.9e-181 637.9 440 68.6
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 5.9e-181 637.9 440 69.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 2.9e-180 635.6 433 70.9
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 2.9e-180 635.6 432 69.4
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 8.5e-180 634.0 432 70.6
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 3.2e-179 632.1 430 70.5
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 3.2e-179 632.1 432 70.6
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.6e-178 629.8 432 69.2
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 3.6e-178 628.6 430 70.5
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 4.0e-177 625.2 430 69.5
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 6.7e-177 624.4 440 67.3
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.5e-176 623.2 430 69.8
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.5e-176 623.2 430 70.0
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 2.0e-176 622.9 477 64.2
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 3.3e-176 622.1 432 69.0
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 5.7e-176 621.3 434 68.9
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.7e-175 619.8 434 67.3
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.2e-175 619.4 431 68.9
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 2.2e-175 619.4 459 66.4
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 6.3e-175 617.8 376 81.9
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 8.2e-175 617.5 440 66.6
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 2.4e-174 615.9 430 69.5
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.1e-174 615.5 432 68.1
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 5.3e-174 614.8 435 66.0
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.2e-173 613.6 728 49.3
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 2.2e-172 609.4 416 70.7
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.9e-172 609.0 426 67.8
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 5.0e-172 608.2 442 67.0
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 8.5e-172 607.4 436 68.1
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 2.5e-171 605.9 443 67.3
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 7.2e-171 604.4 434 68.9
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 8.8e-169 597.4 472 63.3
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 7.5e-168 594.3 444 66.2
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 1.7e-167 593.2 434 64.1
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 4.8e-167 591.7 481 61.5
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 8.3e-167 590.9 416 69.0
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 9.1e-166 587.4 362 80.9
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 2.0e-165 586.3 480 61.9
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.7e-164 583.2 429 63.4
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.9e-163 579.7 513 58.3
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 2.5e-163 579.3 433 64.2
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.5e-163 577.4 439 64.0
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.5e-163 577.4 439 64.0
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.6e-162 575.5 429 65.5
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 4.7e-162 575.1 524 55.2
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 4.4e-160 568.5 375 72.8
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.3e-159 567.0 432 65.5
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.3e-159 567.0 434 64.3
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 7.0e-158 561.2 448 60.7
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 2.9e-156 555.8 421 66.0
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 6.8e-153 544.7 383 69.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.4e-152 542.0 434 61.8
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 7.5e-152 541.2 379 68.3
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 5.0e-148 528.5 450 60.4
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 5.0e-148 528.5 380 66.3
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.0e-148 528.5 380 66.3
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 5.0e-148 528.5 429 63.2
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 7.5e-136 488.0 430 57.2
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 2.7e-133 479.6 701 40.7
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.5e-131 473.8 300 75.7
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 3.3e-131 472.6 438 54.1
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.0e-124 451.1 431 51.3
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 2.1e-122 443.4 448 49.3
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 2.8e-122 443.0 339 65.5
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.8e-122 442.2 317 67.2
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 5.1e-116 422.2 341 60.7
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 2.1e-114 416.8 295 68.8
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.0e-108 397.9 452 47.1
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 1.5e-96 357.5 350 51.4
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 3.5e-93 346.3 223 76.2
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.1e-85 320.5 254 63.4
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 9.7e-83 311.6 219 70.8
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 2.0e-72 277.3 236 61.9
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.1e-67 261.5 215 63.7
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.5e-67 261.2 283 51.2
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 7.4e-67 258.8 161 76.4
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.3e-60 237.3 429 33.6
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.3e-58 228.8 433 36.0
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.2e-56 224.9 131 78.6
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.5e-54 217.2 159 66.0
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.5e-51 208.0 134 76.1
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.7e-50 203.4 140 69.3
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 6.6e-47 192.6 142 65.5
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.2e-40 171.8 318 34.0
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.2e-35 155.2 200 47.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 4.4e-35 153.3 193 47.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.8e-35 152.9 149 48.3
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.5e-27 125.9 120 52.5
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-23 115.2 146 47.9
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 2.3e-23 114.4 95 54.7
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 7.6e-19 99.4 79 57.0
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 6.4e-18 96.3 56 71.4
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 2.7e-16 90.9 71 57.7
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 4.6e-16 90.1 79 55.7
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 8.6e-15 85.9 79 53.2
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 5.2e-12 76.6 54 70.4
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 6.8e-12 76.3 81 40.7
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.4e-10 69.7 47 68.1
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.9e-09 68.2 43 69.8
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 2.4e-09 67.8 43 65.1
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 1.5e-06 58.5 39 64.1
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 9.6e-06 55.8 35 74.3


User provided reference genes

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