Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.9e-90 335.9 176 100.0
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.1e-82 310.1 174 93.1
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 6.7e-80 300.8 173 90.2
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.8e-77 292.7 173 88.4
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 7.2e-74 280.8 173 86.1
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 1.5e-71 273.1 173 83.2
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 6.5e-67 257.7 173 80.3
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.0e-64 250.4 186 74.2
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.3e-62 243.4 169 77.5
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 1.3e-59 233.4 174 75.3
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 8.9e-56 220.7 172 74.4
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 4.4e-55 218.4 197 64.5
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 5.7e-55 218.0 180 71.1
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 5.7e-55 218.0 180 71.1
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 3.5e-52 208.8 181 68.5
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 1.7e-51 206.5 187 66.3
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 3.0e-51 205.7 185 67.6
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 3.9e-51 205.3 174 68.4
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 6.6e-51 204.5 180 67.2
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.3e-50 202.2 181 65.7
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 7.3e-50 201.1 175 68.0
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 7.3e-50 201.1 180 65.6
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 9.5e-50 200.7 182 67.0
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 1.2e-49 200.3 175 64.6
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 1.6e-49 199.9 181 67.4
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 2.1e-49 199.5 188 65.4
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 2.8e-49 199.1 180 64.4
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.8e-49 199.1 190 66.3
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 3.6e-49 198.7 185 65.4
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 4.7e-49 198.4 179 67.0
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 8.0e-49 197.6 180 63.9
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.8e-48 196.4 181 64.6
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.3e-48 196.1 174 64.9
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 3.1e-48 195.7 181 63.5
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 3.1e-48 195.7 182 66.5
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 4.0e-48 195.3 182 64.8
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 4.0e-48 195.3 180 62.8
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.2e-48 194.9 181 64.1
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 8.9e-48 194.1 182 62.6
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 1.5e-47 193.4 174 64.4
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 2.0e-47 193.0 178 64.6
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 2.6e-47 192.6 172 65.1
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.6e-47 192.6 173 64.2
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.6e-47 192.6 180 63.9
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 7.5e-47 191.0 186 63.4
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 7.5e-47 191.0 177 64.4
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 1.3e-46 190.3 175 65.7
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.7e-46 189.9 178 64.0
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 2.2e-46 189.5 181 63.5
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.9e-46 189.1 181 63.0
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 3.7e-46 188.7 178 62.9
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 4.9e-46 188.3 176 65.3
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 6.4e-46 188.0 181 63.0
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.4e-46 188.0 181 63.0
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 1.1e-45 187.2 188 62.2
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 3.2e-45 185.7 181 64.1
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 7.0e-45 184.5 186 61.3
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 9.2e-45 184.1 177 61.0
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.2e-44 183.7 180 63.3
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 2.7e-44 182.6 187 61.5
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 6.0e-44 181.4 189 60.3
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 1.0e-43 180.6 115 84.3
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 2.3e-43 179.5 177 58.8
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 5.0e-43 178.3 191 59.2
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 8.6e-43 177.6 179 59.2
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 8.6e-43 177.6 124 75.8
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 1.1e-42 177.2 188 59.6
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.5e-42 176.8 180 60.6
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.9e-42 176.4 188 58.5
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.9e-42 176.4 186 57.0
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 2.5e-42 176.0 189 59.3
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 4.3e-42 175.3 177 59.9
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 5.6e-42 174.9 188 58.5
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 7.3e-42 174.5 180 60.0
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.6e-41 173.3 181 59.7
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.6e-41 173.3 181 59.7
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 1.6e-41 173.3 183 57.9
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 1.6e-41 173.3 186 57.5
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 2.8e-41 172.6 185 58.4
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.8e-41 172.6 122 74.6
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 3.6e-41 172.2 183 59.0
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 3.6e-41 172.2 118 76.3
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 4.7e-41 171.8 183 58.5
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 1.4e-40 170.2 178 55.1
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 1.4e-40 170.2 180 58.3
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 1.4e-40 170.2 180 58.3
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 2.3e-40 169.5 179 56.4
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 3.1e-40 169.1 185 57.3
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 4.0e-40 168.7 180 58.3
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 4.0e-40 168.7 178 56.2
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 5.2e-40 168.3 183 57.9
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 2.6e-39 166.0 234 48.7
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 1.3e-38 163.7 186 55.9
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 8.3e-38 161.0 169 58.0
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 8.3e-38 161.0 197 55.8
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 2.4e-37 159.5 184 53.8
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 2.4e-37 159.5 189 54.5
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 9.2e-37 157.5 133 64.7
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.7e-35 153.3 135 66.7
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 3.9e-35 152.1 184 52.2
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 8.6e-35 151.0 192 52.1
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.1e-34 150.6 183 51.4
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 3.6e-33 145.6 186 50.0
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.4e-32 143.7 186 49.5
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-32 143.7 126 65.1
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 2.2e-30 136.3 188 46.3
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 6.4e-30 134.8 90 81.1
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.1e-29 134.0 244 42.2
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.4e-29 133.7 116 63.8
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.4e-29 132.9 90 81.1
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 5.4e-29 131.7 167 53.3
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 2.1e-28 129.8 117 59.8
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.7e-27 126.7 165 49.7
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 3.0e-27 125.9 161 50.3
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 5.1e-27 125.2 117 60.7
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 8.7e-27 124.4 144 54.2
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 1.9e-26 123.2 177 50.8
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.2e-25 120.6 91 72.5
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 1.6e-25 120.2 137 53.3
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 4.7e-25 118.6 147 52.4
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.8e-24 116.7 168 49.4
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.6e-23 112.8 183 49.7
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 1.3e-17 94.0 87 56.3
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 1.3e-17 94.0 89 57.3
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 1.8e-16 90.1 67 65.7
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 2.2e-14 83.2 116 44.8
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 6.4e-14 81.6 122 45.1
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 2.7e-12 76.3 104 49.0
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 1.0e-11 74.3 81 54.3
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.7e-11 71.6 58 72.4
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 2.5e-10 69.7 64 60.9
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 4.3e-10 68.9 138 39.9
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 5.6e-10 68.6 80 50.0
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 5.6e-10 68.6 80 50.0
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 1.2e-07 60.8 99 42.4
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 1.5e-07 60.5 62 51.6
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 4.9e-06 55.5 99 43.4
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 4.9e-06 55.5 60 53.3
CAN.G419.11 Capsicum annuum HOM05D005654 ORTHO05D006438 6.4e-06 55.1 39 79.5
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 8.4e-06 54.7 78 41.0


User provided reference genes

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