Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 2.9e-122 443.0 259 100.0
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 3.4e-107 392.9 261 80.1
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 1.5e-86 324.3 264 68.2
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 1.4e-63 248.1 278 53.2
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 1.4e-63 248.1 275 51.6
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 1.8e-63 247.7 275 53.8
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 4.4e-54 216.5 268 48.9
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 9.2e-52 208.8 282 46.8
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 2.0e-51 207.6 272 47.8
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 4.6e-51 206.5 276 47.1
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 1.1e-49 201.8 270 47.0
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 1.9e-49 201.1 270 45.9
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 7.3e-49 199.1 268 47.0
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 2.1e-48 197.6 275 46.2
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 8.0e-48 195.7 271 46.1
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 3.1e-47 193.7 270 47.4
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 6.8e-47 192.6 269 45.4
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 1.2e-46 191.8 270 46.7
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 1.5e-46 191.4 265 44.2
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 2.6e-46 190.7 271 45.4
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 1.7e-45 188.0 267 43.8
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 2.2e-45 187.6 271 44.6
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 4.9e-45 186.4 263 45.6
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 8.3e-45 185.7 274 44.5
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 1.1e-44 185.3 265 45.3
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 1.4e-44 184.9 265 45.3
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 9.2e-44 182.2 273 48.0
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 1.2e-43 181.8 275 44.0
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 1.6e-43 181.4 265 44.5
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 2.0e-43 181.0 269 41.6
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.3e-42 178.3 218 47.7
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 3.0e-42 177.2 213 47.4
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 6.6e-42 176.0 277 43.0
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 1.5e-41 174.9 283 41.7
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 1.9e-41 174.5 272 48.5
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 3.3e-41 173.7 272 40.4
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 5.6e-41 172.9 274 42.0
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 1.2e-40 171.8 278 40.3
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 1.2e-40 171.8 273 41.8
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 2.1e-40 171.0 279 41.9
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 4.7e-40 169.9 273 52.0
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 4.7e-40 169.9 285 41.8
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 8.1e-40 169.1 274 40.9
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 2.3e-39 167.5 272 41.9
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 4.0e-39 166.8 270 40.7
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 4.0e-39 166.8 267 44.2
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 6.8e-39 166.0 277 41.2
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 4.4e-38 163.3 291 39.9
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 3.7e-37 160.2 278 38.8
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 4.9e-37 159.8 276 40.9
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 2.4e-36 157.5 281 37.7
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 7.1e-36 156.0 282 41.1
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 9.2e-36 155.6 280 41.1
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 1.6e-35 154.8 214 43.5
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 2.1e-35 154.5 273 37.4
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 3.5e-35 153.7 281 38.8
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 1.9e-33 147.9 272 45.6
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 2.1e-32 144.4 188 46.3
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 2.8e-32 144.1 271 39.1
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 3.6e-32 143.7 266 44.7
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 8.9e-31 139.0 156 48.7
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 9.9e-30 135.6 276 36.2
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 2.4e-28 131.0 240 38.3
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 7.8e-27 125.9 154 44.8
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 2.3e-26 124.4 197 40.6
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 5.1e-26 123.2 192 41.1
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 1.1e-25 122.1 280 39.3
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 1.5e-25 121.7 231 39.0
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 7.3e-25 119.4 285 32.6
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 9.6e-25 119.0 208 41.8
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 2.1e-24 117.9 215 38.1
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 9.0e-23 112.5 246 34.6
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 1.1e-20 105.5 255 32.5
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 3.2e-20 104.0 252 32.9
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 3.2e-20 104.0 205 36.6
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 4.2e-20 103.6 203 40.9
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 4.6e-19 100.1 214 35.0
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 1.0e-18 99.0 199 37.7
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 2.3e-18 97.8 205 36.1
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 3.3e-17 94.0 156 36.5
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 1.3e-16 92.0 206 34.0
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 1.6e-16 91.7 108 44.4
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 1.6e-16 91.7 193 38.3
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 2.1e-16 91.3 156 36.5
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 4.8e-16 90.1 156 35.9
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 4.8e-16 90.1 111 43.2
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 6.4e-13 79.7 119 39.5
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 1.2e-11 75.5 123 40.7
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 4.8e-08 63.5 48 60.4


User provided reference genes

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