Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 9.8e-58 226.5 107 100.0
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 2.3e-54 215.3 107 95.3
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 5.0e-54 214.2 107 93.5
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 9.5e-53 209.9 107 91.6
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.2e-52 209.5 107 91.6
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.6e-52 209.1 107 90.7
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 6.2e-52 207.2 107 88.8
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.1e-51 206.5 106 89.6
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.8e-51 205.7 105 90.5
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 4.4e-50 201.1 107 86.0
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.3e-49 199.5 107 85.0
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.9e-49 198.4 107 84.1
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 82.2
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 84.1
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 81.3
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.0e-46 189.9 107 81.3
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 3.0e-46 188.3 107 81.3
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.0e-46 188.3 106 82.1
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.9e-46 188.0 106 83.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 5.1e-46 187.6 105 81.9
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 6.6e-46 187.2 107 79.4
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 81.3
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 78.5
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 78.5
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 80.4
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 79.4
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.3e-45 184.9 105 81.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 79.4
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 78.5
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 78.5
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 78.5
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 78.5
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 78.5
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 5.6e-45 184.1 107 77.6
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.6e-45 184.1 107 78.5
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 77.6
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 77.6
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.2e-44 183.0 107 78.5
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-44 183.0 103 79.6
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.2e-44 183.0 107 77.6
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.2e-44 183.0 107 77.6
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.2e-44 183.0 105 77.1
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.2e-44 183.0 107 77.6
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 2.1e-44 182.2 107 76.6
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 76.6
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 77.6
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 6.2e-44 180.6 104 78.8
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 6.2e-44 180.6 104 78.8
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 107 74.8
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 2.4e-43 178.7 107 75.7
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.4e-43 178.7 106 77.4
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 74.8
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 5.2e-43 177.6 105 76.2
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 5.2e-43 177.6 105 78.1
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 6.8e-43 177.2 105 78.1
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 8.9e-43 176.8 107 75.7
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.2e-42 176.4 107 74.8
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.2e-42 176.4 107 74.8
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-42 176.4 103 76.7
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.2e-42 176.4 107 77.6
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.5e-42 176.0 107 74.8
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 75.2
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 75.2
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.6e-42 175.3 107 73.8
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.6e-42 175.3 107 73.8
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.6e-42 175.3 107 73.8
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.6e-42 175.3 107 74.8
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 75.2
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.4e-42 174.9 105 75.2
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.4e-42 174.9 105 75.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.4e-42 174.9 105 75.2
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 73.8
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.4e-42 174.5 103 75.7
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 74.8
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 73.8
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 73.8
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.6e-42 173.7 107 73.8
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 9.9e-42 173.3 103 73.8
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 72.9
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.7e-41 172.6 105 74.3
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 1.7e-41 172.6 105 75.2
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 72.4
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 71.4
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 74.3
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.8e-41 171.4 103 72.8
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.9e-41 171.0 107 72.9
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 4.9e-41 171.0 105 73.3
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 6.4e-41 170.6 105 73.3
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 74.8
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 8.4e-41 170.2 106 71.7
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.1e-40 169.9 106 72.6
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.1e-40 169.9 105 73.3
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.1e-40 169.9 107 73.8
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.4e-40 168.7 107 69.2
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.2e-40 168.3 97 78.4
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.4e-40 167.5 107 70.1
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 5.4e-40 167.5 107 70.1
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 5.4e-40 167.5 104 72.1
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 69.2
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 7.1e-40 167.2 104 70.2
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 9.2e-40 166.8 103 71.8
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 9.2e-40 166.8 103 71.8
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.2e-39 166.4 107 69.2
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.5e-39 164.9 107 67.3
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 70.5
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.5e-39 164.9 107 70.1
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.6e-39 164.5 103 69.9
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 70.5
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 69.5
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.0e-38 163.3 105 70.5
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 103 69.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 105 70.5
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.3e-38 162.9 103 68.9
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.7e-38 162.5 102 70.6
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.7e-38 162.5 110 67.3
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.3e-38 162.2 103 68.9
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 2.3e-38 162.2 103 68.9
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 3.9e-38 161.4 97 74.2
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 3.9e-38 161.4 103 69.9
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 5.1e-38 161.0 102 69.6
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 8.6e-38 160.2 107 68.2
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.1e-37 159.8 109 67.0
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 4.3e-37 157.9 103 68.0
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 9.6e-37 156.8 107 65.4
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.6e-36 156.0 106 69.8
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 2.8e-36 155.2 105 67.6
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 3.6e-36 154.8 103 68.9
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 3.6e-36 154.8 105 65.7
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 6.2e-36 154.1 103 68.0
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.4e-35 152.9 97 70.1
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.4e-35 152.1 108 64.8
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 5.2e-35 151.0 87 74.7
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 9.0e-35 150.2 106 63.2
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.2e-34 149.8 105 62.9
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 3.4e-34 148.3 89 73.0
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 9.9e-34 146.7 106 63.2
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.8e-33 144.8 169 46.7
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 3.2e-32 141.7 87 73.6
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.1e-29 133.3 80 75.0
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 7.3e-29 130.6 106 58.5
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.8e-28 127.9 102 57.8
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.4e-27 125.6 76 71.1
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.4e-27 125.6 102 54.9
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 3.1e-27 125.2 82 69.5
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.2e-26 123.2 92 59.8
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.0e-26 122.5 100 56.0
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 1.7e-25 119.4 103 54.4
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.7e-25 119.4 95 53.7
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 3.8e-25 118.2 63 88.9
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.8e-22 109.4 82 63.4
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 1.6e-20 102.8 95 43.2
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 3.7e-20 101.7 67 68.7
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 3.7e-20 101.7 63 73.0
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 5.3e-19 97.8 65 73.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 6.9e-19 97.4 69 68.1
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.2e-18 96.7 92 45.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 9.9e-18 93.6 59 71.2
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.3e-17 93.2 45 91.1
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 2.2e-17 92.4 70 60.0
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 3.8e-17 91.7 89 43.8
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 3.2e-16 88.6 54 74.1
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 5.5e-16 87.8 60 66.7
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 9.3e-16 87.0 53 73.6
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 3.5e-15 85.1 63 61.9
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 7.9e-15 84.0 47 78.7
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.0e-14 82.0 55 63.6
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.5e-13 79.0 105 44.8
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 7.4e-13 77.4 40 80.0
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 3.0e-06 55.5 87 32.2


User provided reference genes

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