Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 5.1e-290 1000.3 499 100.0
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 3.0e-266 921.4 496 91.3
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 9.4e-244 846.7 491 84.1
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 2.7e-243 845.1 496 81.7
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 1.8e-242 842.4 491 82.5
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 1.5e-241 839.3 493 81.5
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 1.4e-236 822.8 460 86.5
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 1.2e-219 766.5 521 74.1
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 2.7e-214 748.8 498 73.5
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 5.9e-214 747.7 393 91.6
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 2.5e-212 742.3 492 73.6
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 2.3e-210 735.7 492 72.0
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 4.8e-208 728.0 494 72.7
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.4e-207 726.5 489 72.0
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 7.7e-206 720.7 491 70.1
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 1.7e-205 719.5 493 71.8
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 2.9e-205 718.8 489 71.0
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 3.8e-205 718.4 492 70.5
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.5e-204 716.5 489 70.8
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 1.9e-204 716.1 694 60.1
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 4.2e-204 714.9 491 69.9
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 4.2e-204 714.9 498 70.1
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 9.5e-204 713.8 489 70.6
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 4.7e-203 711.4 495 69.5
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 4.7e-203 711.4 493 70.0
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 2.3e-202 709.1 484 71.1
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 1.8e-199 699.5 495 68.9
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 1.2e-198 696.8 493 69.8
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 1.2e-198 696.8 495 69.5
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 2.7e-198 695.7 467 73.0
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 1.7e-197 693.0 491 70.3
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.7e-197 693.0 467 72.2
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 5.6e-196 688.0 494 67.6
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 3.6e-195 685.3 491 69.5
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 1.0e-194 683.7 497 68.6
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 2.3e-194 682.6 494 67.0
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 2.3e-194 682.6 494 67.2
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 4.0e-194 681.8 497 66.0
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.2e-193 680.2 509 67.0
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.2e-193 680.2 509 67.0
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.2e-193 680.2 509 67.0
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 1.5e-193 679.9 497 65.4
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 1.5e-193 679.9 464 72.2
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 3.4e-193 678.7 491 67.6
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 3.4e-193 678.7 395 83.3
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 1.7e-192 676.4 470 68.9
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 3.7e-192 675.2 488 66.6
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.3e-192 674.1 509 66.8
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 1.1e-191 673.7 544 63.1
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 1.9e-191 672.9 472 70.6
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 7.0e-191 671.0 493 66.7
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 1.2e-190 670.2 544 62.7
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 2.0e-190 669.5 492 66.3
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 6.0e-190 667.9 498 64.9
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 6.0e-190 667.9 498 64.9
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 7.8e-190 667.5 494 67.6
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 1.0e-189 667.2 493 65.7
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 1.3e-189 666.8 493 65.7
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 1.7e-189 666.4 493 66.5
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 6.6e-189 664.5 488 66.4
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 1.1e-188 663.7 467 69.2
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 7.3e-188 661.0 499 64.7
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 6.2e-187 657.9 528 61.4
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 1.4e-186 656.8 493 64.5
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 2.3e-186 656.0 492 65.7
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.5e-185 653.3 492 65.7
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 2.9e-184 649.0 499 63.3
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 4.9e-184 648.3 499 65.1
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 7.1e-183 644.4 498 63.5
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.2e-177 627.1 478 62.6
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 1.5e-177 626.7 453 66.0
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 2.2e-176 622.9 436 71.6
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 4.9e-176 621.7 522 59.2
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 4.6e-174 615.1 490 61.6
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 7.8e-174 614.4 492 60.0
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 3.3e-172 609.0 482 62.0
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 9.6e-172 607.4 496 61.9
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 2.1e-171 606.3 608 54.6
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 3.6e-171 605.5 499 62.5
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 8.1e-171 604.4 510 60.6
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 5.8e-169 598.2 479 64.5
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.9e-167 593.2 531 58.9
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 1.0e-165 587.4 487 57.3
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 3.0e-165 585.9 497 59.4
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 2.4e-162 576.2 418 68.2
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 3.2e-159 565.8 411 66.2
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 6.6e-157 558.1 517 56.7
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 9.6e-156 554.3 514 54.5
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 9.6e-156 554.3 412 67.0
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 2.3e-149 533.1 491 55.8
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 5.5e-143 511.9 484 53.7
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 2.5e-140 503.1 482 53.5
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 7.6e-137 491.5 483 50.7
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 2.1e-134 483.4 331 71.6
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.8e-133 480.3 483 53.8
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 1.3e-131 474.2 531 51.6
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 5.3e-130 468.8 335 69.9
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 3.8e-128 462.6 377 63.7
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.8e-125 453.8 447 50.8
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 1.0e-112 411.4 301 68.1
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 5.5e-111 405.6 465 49.0
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.4e-106 391.0 985 30.8
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 4.5e-105 386.0 370 54.3
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 1.1e-103 381.3 504 46.2
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 9.4e-95 351.7 439 46.9
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.0e-77 295.0 201 73.6
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 2.3e-77 293.9 251 61.0
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 7.0e-74 282.3 555 35.7
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 2.3e-72 277.3 309 51.1
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 1.4e-69 268.1 491 36.9
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.3e-64 250.8 201 65.2
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 1.1e-58 231.9 161 66.5
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.4e-58 231.5 160 73.1
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 4.3e-55 219.9 183 56.3
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 1.3e-43 181.8 123 74.8
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 1.9e-34 151.4 108 60.2
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 7.4e-31 139.4 149 49.0
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 1.8e-29 134.8 80 83.8
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 1.3e-22 112.1 67 73.1
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 2.4e-21 107.8 79 60.8
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.9e-18 98.2 66 72.7
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.7e-17 94.4 114 46.5
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 3.7e-14 84.0 50 76.0
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 1.3e-11 75.5 49 71.4
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 1.3e-11 75.5 41 80.5
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.0e-07 61.6 323 24.1
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.0e-07 61.6 323 24.1
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 5.7e-07 60.1 194 26.3
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 5.7e-07 60.1 247 26.7
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 1.3e-06 58.9 312 24.7
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.8e-06 57.8 319 22.3
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 3.7e-06 57.4 48 60.4
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 3.7e-06 57.4 313 24.0
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 3.7e-06 57.4 209 27.3
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 4.8e-06 57.0 106 30.2
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 4.8e-06 57.0 211 26.1
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.3e-06 56.6 217 26.7
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.3e-06 56.6 217 26.7
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 6.3e-06 56.6 215 25.6


User provided reference genes

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