Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.2e-92 343.2 173 100.0
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 9.2e-90 333.6 173 96.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.1e-87 326.6 175 92.6
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.6e-78 296.2 181 82.9
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 4.8e-78 294.7 178 83.1
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.4e-77 292.4 174 84.5
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.4e-76 288.5 175 80.0
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.2e-73 280.0 174 82.2
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.1e-73 279.3 173 80.9
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.6e-73 278.1 173 80.3
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 4.6e-73 278.1 171 80.7
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.3e-72 276.6 176 80.1
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.9e-72 275.0 173 79.2
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.9e-72 275.0 173 79.2
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.9e-72 275.0 173 79.2
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 5.1e-72 274.6 173 79.8
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.5e-71 273.1 173 79.2
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 4.3e-71 271.6 176 79.5
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 4.3e-71 271.6 172 79.7
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 5.6e-71 271.2 178 77.0
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 5.6e-71 271.2 173 79.2
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 7.3e-71 270.8 173 78.0
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 2.1e-70 269.2 173 79.2
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.1e-70 269.2 173 76.9
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.1e-70 269.2 173 78.6
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.1e-70 269.2 173 77.5
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.8e-70 268.9 173 78.0
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 2.8e-70 268.9 173 77.5
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 4.8e-70 268.1 173 78.6
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 4.8e-70 268.1 173 75.7
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 6.2e-70 267.7 173 77.5
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.8e-69 266.2 171 76.6
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.8e-69 266.2 171 76.0
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 3.1e-69 265.4 174 77.6
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 9.0e-69 263.8 174 77.6
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 9.0e-69 263.8 175 75.4
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.5e-68 263.1 173 73.4
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.0e-68 262.7 177 77.4
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.6e-68 262.3 174 78.7
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 2.6e-68 262.3 172 78.5
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 3.4e-68 261.9 174 77.0
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.8e-68 261.2 175 76.0
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 9.9e-68 260.4 174 75.9
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 9.9e-68 260.4 169 78.1
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 73.4
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 75.7
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.3e-67 260.0 175 75.4
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.2e-67 259.2 181 73.5
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.2e-67 259.2 174 76.4
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.8e-67 258.5 173 72.3
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 3.8e-67 258.5 183 71.0
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 6.4e-67 257.7 174 73.6
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 8.4e-67 257.3 173 74.0
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 8.4e-67 257.3 159 78.6
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.4e-66 256.5 161 77.6
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 74.7
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 73.0
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 74.7
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.4e-66 255.8 162 77.2
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 3.2e-66 255.4 174 73.6
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.2e-66 255.4 202 67.3
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.2e-66 255.4 162 76.5
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 4.2e-66 255.0 173 73.4
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.4e-66 254.6 162 77.2
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 5.4e-66 254.6 171 73.7
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 7.1e-66 254.2 173 72.8
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 7.1e-66 254.2 162 76.5
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.3e-66 253.8 202 66.8
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.3e-66 253.8 202 66.8
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 1.2e-65 253.4 173 73.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.6e-65 253.1 173 72.8
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.6e-65 253.1 162 75.9
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.6e-65 253.1 170 74.1
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 72.8
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 72.8
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 2.7e-65 252.3 163 75.5
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 72.3
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 74.6
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 4.6e-65 251.5 175 73.1
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 6.0e-65 251.1 173 71.7
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 6.0e-65 251.1 173 72.3
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 6.0e-65 251.1 173 71.7
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 6.0e-65 251.1 173 71.7
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 6.0e-65 251.1 174 71.3
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 6.0e-65 251.1 197 68.5
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 7.9e-65 250.8 173 71.7
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 7.9e-65 250.8 174 71.3
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.0e-64 250.4 173 72.3
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 2.3e-64 249.2 170 74.7
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.3e-64 249.2 173 71.1
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 2.3e-64 249.2 173 72.3
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 6.7e-64 247.7 174 71.3
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 6.7e-64 247.7 171 73.1
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.1e-63 246.9 173 71.1
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 4.3e-63 245.0 167 71.3
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 7.4e-63 244.2 172 69.8
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 9.6e-63 243.8 208 62.5
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 9.6e-63 243.8 162 75.3
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.3e-62 243.4 171 69.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 8.1e-62 240.7 174 69.5
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.1e-61 240.4 177 71.2
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 2.4e-61 239.2 167 69.5
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.1e-61 238.8 220 60.0
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 4.0e-61 238.4 165 70.9
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 4.0e-61 238.4 165 70.9
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 2.6e-60 235.7 165 70.3
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 3.8e-59 231.9 227 55.9
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.7e-57 225.7 139 79.9
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-56 223.0 211 60.2
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 9.6e-55 217.2 173 61.3
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.6e-54 216.5 265 49.4
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.6e-54 216.5 194 63.9
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 2.4e-53 212.6 144 71.5
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 3.4e-52 208.8 120 83.3
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 5.8e-52 208.0 184 64.1
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 9.3e-50 200.7 174 63.2
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.5e-47 193.4 170 60.6
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 3.1e-45 185.7 113 76.1
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 4.2e-42 175.3 173 57.8
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 3.0e-40 169.1 113 67.3
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.5e-39 166.8 109 77.1
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 5.7e-39 164.9 139 54.0
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 3.1e-37 159.1 109 72.5
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 2.0e-36 156.4 116 66.4
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.3e-35 153.7 119 65.5
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.7e-35 153.3 99 77.8
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 8.5e-35 151.0 111 67.6
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 5.5e-34 148.3 166 44.6
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.7e-33 146.0 118 66.9
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.7e-33 146.0 106 65.1
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.2e-30 136.3 100 67.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.4e-29 132.9 103 65.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-25 120.2 81 67.9
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-25 120.2 81 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 3.0e-24 115.9 112 43.8
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.2e-22 109.8 63 87.3
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 4.8e-22 108.6 110 41.8
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.8e-22 108.6 96 60.4
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.1e-21 105.9 85 68.2
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.3e-21 105.1 64 82.8
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.1e-21 104.4 93 59.1
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 9.1e-21 104.4 104 44.2
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 1.3e-19 100.5 72 68.1
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.2e-19 99.8 61 78.7
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 2.5e-18 96.3 88 50.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 1.6e-17 93.6 106 41.5
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 2.1e-17 93.2 65 69.2
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 3.7e-14 82.4 136 35.3
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.8e-14 82.0 50 80.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.0e-12 76.6 104 47.1
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.7e-06 57.0 36 75.0


User provided reference genes

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