Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 4182.5 2157 100.0
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 3741.0 2161 89.7
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 3685.2 2163 88.7
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 3542.3 2037 90.4
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 3342.7 2165 80.1
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 3324.3 2163 79.8
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 3311.9 2161 79.6
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 3293.1 2165 78.9
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 3234.1 2162 78.5
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2992.2 2080 75.1
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2665.6 2170 65.3
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2542.3 2177 63.1
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2528.4 2178 62.5
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2526.9 2175 62.3
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2496.5 2172 62.9
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2474.5 2174 62.3
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2462.6 2173 62.2
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2457.2 2177 61.8
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2457.2 2176 61.6
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2456.8 2167 60.9
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2451.4 2199 60.9
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2450.2 2176 61.2
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2449.1 2167 61.1
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2439.5 2187 60.5
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2434.4 2189 60.2
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2431.0 2197 60.0
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2415.6 2264 58.7
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2392.5 2188 59.9
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2379.0 2168 60.8
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2372.0 2204 58.9
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 2308.9 2174 58.3
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 2298.1 2176 57.9
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 2286.5 2173 57.8
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2273.8 2176 57.9
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2273.8 1952 62.8
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 2238.0 2178 57.2
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2201.4 2176 56.3
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2201.0 2186 56.3
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2192.9 2028 57.8
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 2192.5 2203 55.9
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 2179.4 2177 55.6
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2176.7 2180 54.9
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 2163.3 2205 55.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 2157.9 2169 55.7
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2141.3 2188 54.7
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 2124.7 2182 55.4
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 2124.4 2249 53.8
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2108.2 2203 53.9
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 2097.0 2096 55.5
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 2072.4 2169 54.4
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2048.1 1557 71.1
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 2030.8 2146 54.1
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2025.0 2281 51.7
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 2020.4 2171 53.3
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1979.9 1677 63.9
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1959.9 2183 51.0
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1959.1 1890 57.9
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1956.8 2158 53.1
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1955.6 2128 51.6
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1941.0 1906 56.8
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1932.1 1889 57.3
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1892.5 2190 50.5
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1887.8 2168 51.0
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1879.8 2122 51.1
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1863.6 2093 50.8
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1825.1 2264 48.5
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1794.2 1998 52.4
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1785.0 1972 52.4
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1780.0 2030 51.0
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1766.1 1869 53.8
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 0.0e+00 1709.1 1292 70.0
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1630.9 1537 56.1
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1575.8 1757 52.1
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1568.9 1132 74.0
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1553.9 1978 45.0
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1508.0 1667 51.6
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1442.2 1691 50.3
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1425.2 1800 45.9
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1408.7 1700 50.2
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1404.0 1700 49.7
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1397.9 1122 64.3
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1375.1 2304 39.7
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1236.1 2265 37.8
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1213.4 1941 39.2
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1086.2 1023 60.3
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 2.4e-304 1050.0 967 58.8
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 7.3e-293 1011.9 1015 53.7
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 1.1e-275 954.9 1126 50.5
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 4.6e-263 912.9 1379 40.8
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.5e-258 897.9 950 52.0
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 1.3e-241 841.6 504 83.7
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 1.2e-223 781.9 504 77.8
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.3e-220 771.9 2725 28.1
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 4.8e-204 716.8 636 59.4
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 2.0e-202 711.4 1463 32.7
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 4.2e-200 703.7 882 46.6
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.6e-167 595.5 378 78.8
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 5.1e-153 547.4 413 67.3
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 3.4e-133 481.5 562 54.1
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 1.2e-114 419.9 352 63.6
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.3e-113 416.4 405 55.3
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.3e-113 415.6 343 66.8
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 5.1e-113 414.5 405 55.1
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 3.7e-103 381.7 303 75.9
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 4.1e-102 378.3 216 86.1
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 2.1e-98 365.9 216 81.5
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 5.9e-93 347.8 230 74.8
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 6.5e-92 344.4 345 56.2
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 1.2e-88 333.6 182 86.8
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 3.4e-80 305.4 348 59.2
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 2.8e-79 302.4 379 57.3
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.4e-78 300.1 556 38.3
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 1.5e-67 263.5 128 98.4
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 2.9e-63 249.2 285 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.3e-55 223.8 203 54.7
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 3.0e-52 212.6 153 66.7
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 6.8e-49 201.4 215 60.9
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 2.2e-47 196.4 176 65.3
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 2.2e-47 196.4 170 66.5
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 3.5e-45 189.1 211 51.7
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.8e-42 179.5 130 68.5
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.6e-42 179.1 130 68.5
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.5e-40 173.7 133 62.4
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 9.9e-40 171.0 340 45.3
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 4.9e-39 168.7 141 68.1
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.7e-34 152.1 73 93.2
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.7e-34 152.1 73 93.2
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.7e-28 133.7 109 62.4
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.9e-28 132.5 64 93.8
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.1e-27 131.0 379 39.3
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 3.1e-25 122.9 85 71.8
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 4.0e-25 122.5 150 48.0
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 9.0e-25 121.3 199 45.7
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 2.6e-24 119.8 175 44.6
Psat7g121640 Pisum sativum HOM05D004910 ORTHO05D030483 3.5e-21 109.4 114 56.1
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 3.9e-20 105.9 65 75.4
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.1e-17 96.3 57 80.7
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 4.0e-17 95.9 79 64.6
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 2.6e-16 93.2 55 83.6
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 7.6e-16 91.7 53 83.0
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 4.9e-15 89.0 82 75.6
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 2.1e-13 83.6 55 80.0
Psat0s2416g0040 Pisum sativum HOM05D063655 ORTHO05D328616 1.0e-12 81.3 60 68.3
Psat0s4644g0040 Pisum sativum HOM05D063655 ORTHO05D030483 3.9e-12 79.3 59 67.8
Psat0s2415g0080 Pisum sativum HOM05D036449 ORTHO05D327484 1.5e-11 77.4 100 46.0
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 6.2e-10 72.0 51 62.7
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 1.8e-09 70.5 105 46.7
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 2.4e-09 70.1 55 65.5
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 5.8e-08 65.5 49 71.4
Gohir.D06G038000 Gossypium hirsutum HOM05D004910 ORTHO05D030909 1.4e-06 60.8 50 66.0


User provided reference genes

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