Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.2e-228 796.2 399 100.0
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.0e-204 715.7 399 90.7
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.2e-195 685.6 395 87.1
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 6.4e-195 684.1 396 87.4
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.3e-175 618.2 404 77.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.8e-174 614.8 390 79.5
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 4.5e-172 608.2 401 76.3
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.2e-170 602.1 403 75.4
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 8.2e-166 587.4 399 74.9
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.9e-163 578.9 423 71.9
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 4.3e-159 565.1 402 72.4
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 7.2e-146 521.2 398 66.3
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.7e-142 510.0 401 63.8
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.4e-141 506.9 402 65.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 4.1e-141 505.4 402 63.7
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 5.0e-139 498.4 396 65.2
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 4.2e-138 495.4 394 64.2
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 4.7e-137 491.9 395 63.5
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 4.0e-136 488.8 403 63.8
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 5.2e-136 488.4 402 61.9
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 6.8e-136 488.0 388 65.5
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 3.4e-135 485.7 394 62.2
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 4.4e-135 485.3 385 63.1
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 5.7e-135 485.0 402 63.4
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 7.5e-135 484.6 394 63.2
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 7.5e-135 484.6 396 62.6
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 6.3e-134 481.5 394 62.7
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.4e-133 479.6 444 59.5
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 3.1e-133 479.2 396 62.9
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 9.1e-133 477.6 398 62.8
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 5.9e-132 474.9 403 63.5
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.8e-131 472.2 408 61.3
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.1e-130 470.7 393 61.3
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.2e-130 469.2 402 61.4
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 2.7e-129 466.1 396 59.8
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 4.7e-129 465.3 392 61.7
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.4e-128 463.8 400 61.2
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.4e-128 463.8 394 57.9
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 3.0e-128 462.6 393 59.5
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.0e-128 462.2 404 58.7
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 5.2e-128 461.8 403 59.3
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 8.8e-128 461.1 394 58.4
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.7e-126 456.8 395 60.0
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.7e-126 456.8 394 58.6
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 2.2e-126 456.4 401 59.1
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 8.3e-126 454.5 394 60.9
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 8.3e-126 454.5 406 57.4
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.8e-125 453.4 401 59.6
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 2.4e-125 453.0 397 58.4
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 4.1e-125 452.2 396 58.8
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 4.1e-125 452.2 398 60.1
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 5.4e-125 451.8 393 59.3
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 9.1e-125 451.1 398 59.0
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.2e-124 450.7 395 58.2
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.6e-124 450.3 404 58.9
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.6e-124 450.3 395 58.2
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.6e-124 450.3 400 58.8
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 2.0e-124 449.9 415 58.1
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.7e-124 449.5 396 58.3
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.7e-124 449.5 396 57.8
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 4.5e-124 448.7 414 57.5
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 5.9e-124 448.4 395 59.0
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.7e-124 448.0 401 59.1
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.0e-123 447.6 394 57.6
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.3e-123 447.2 396 58.1
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.7e-123 446.8 395 57.7
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.7e-123 446.8 401 59.1
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 1.7e-123 446.8 396 57.8
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 2.3e-123 446.4 398 58.3
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.3e-123 446.4 410 58.0
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.9e-123 446.0 402 60.0
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 2.9e-123 446.0 451 53.4
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.8e-123 445.7 395 57.2
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.8e-123 445.7 395 57.2
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.3e-122 442.6 406 58.6
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 1.6e-121 440.3 406 56.4
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 2.1e-121 439.9 300 74.0
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 2.8e-121 439.5 401 55.9
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.4e-120 437.2 397 59.7
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.4e-120 437.2 389 57.3
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 9.2e-117 424.5 398 57.5
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.2e-116 424.1 395 56.7
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.7e-116 422.9 396 55.1
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.7e-116 422.9 399 57.9
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 7.8e-116 421.4 393 57.8
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 5.0e-115 418.7 388 57.2
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 5.6e-114 415.2 422 54.3
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 4.0e-112 409.1 403 55.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 5.2e-112 408.7 401 57.1
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 6.8e-112 408.3 386 57.3
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 4.4e-111 405.6 401 56.9
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 9.8e-111 404.4 401 54.1
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.3e-110 404.1 368 57.9
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 1.7e-110 403.7 401 56.4
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 4.9e-110 402.1 392 55.1
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.4e-109 400.6 400 55.5
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 9.2e-109 397.9 394 55.8
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.5e-106 390.6 403 54.8
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 4.3e-106 389.0 403 52.4
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 5.8e-103 378.6 409 49.6
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 7.8e-100 368.2 299 61.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.7e-99 367.1 408 48.3
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.3e-99 366.7 470 46.4
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 6.6e-99 365.2 371 57.4
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 2.5e-98 363.2 401 49.9
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.2e-93 346.3 313 58.1
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 9.2e-93 344.7 268 63.1
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 4.6e-92 342.4 396 50.3
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 2.5e-90 336.7 351 53.3
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 2.1e-89 333.6 454 44.1
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 6.6e-83 312.0 376 47.3
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 7.6e-79 298.5 411 45.0
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.9e-77 293.9 405 45.9
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.4e-77 293.5 426 40.6
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 4.2e-77 292.7 422 41.2
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.3e-75 287.0 248 61.3
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.6e-71 273.5 401 42.1
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 7.1e-69 265.4 451 37.5
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 6.7e-67 258.8 455 36.9
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 6.7e-59 232.3 298 47.0
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 2.5e-58 230.3 401 38.9
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.6e-57 227.6 171 59.6
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 7.6e-55 218.8 217 54.8
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.3e-54 218.0 272 41.5
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.4e-53 214.5 174 59.8
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 4.2e-45 186.4 177 53.7
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-44 184.1 155 58.1
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.1e-42 178.3 193 55.4
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.7e-41 174.5 167 52.1
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 4.8e-41 172.9 121 68.6
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 3.8e-38 163.3 100 79.0
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 3.5e-31 140.2 175 50.3
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 5.9e-31 139.4 255 35.3
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 4.1e-24 116.7 181 44.2
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 6.1e-20 102.8 143 38.5
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.0e-19 102.1 124 46.8
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 5.7e-18 96.3 59 79.7
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.7e-18 96.3 59 79.7
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 5.7e-18 96.3 106 56.6
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 5.7e-18 96.3 106 56.6
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 3.1e-16 90.5 89 49.4
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 9.1e-16 89.0 65 61.5
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 9.5e-13 79.0 52 71.2
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 9.5e-13 79.0 391 22.5
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.0e-11 75.5 81 44.4
arahy.Tifrunner.gnm1.ann1.2CLZ47 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.7e-10 69.7 74 52.7
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.0e-07 61.2 170 35.3


User provided reference genes

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