Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 0.0e+00 1300.4 664 100.0
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 0.0e+00 1200.3 670 92.1
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 0.0e+00 1122.5 671 86.9
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 0.0e+00 1098.6 672 83.3
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 0.0e+00 1075.8 637 83.2
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 8.2e-304 1046.6 665 78.6
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 4.8e-296 1020.8 632 79.4
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 1.2e-294 1016.1 633 78.8
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 3.8e-293 1011.1 639 78.7
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 9.4e-292 1006.5 636 78.6
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 9.4e-292 1006.5 662 76.1
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 1.0e-290 1003.0 640 78.1
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 3.9e-261 904.8 640 69.7
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.9e-260 902.5 642 70.9
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.6e-259 899.4 640 69.7
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.3e-258 895.6 643 70.9
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 1.9e-255 885.9 639 68.9
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.9e-252 875.9 644 68.8
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 3.3e-252 875.2 639 67.9
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 9.5e-252 873.6 642 67.9
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.6e-251 872.8 639 67.3
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.0e-250 868.2 639 67.6
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 5.2e-250 867.8 639 67.6
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 6.8e-250 867.5 640 68.4
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.5e-249 866.3 639 66.7
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 3.4e-249 865.1 637 66.7
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 8.3e-248 860.5 642 67.0
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 7.1e-247 857.4 642 68.1
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.1e-246 855.9 636 67.3
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.3e-245 852.4 639 67.0
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 9.5e-244 847.0 641 65.5
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 8.9e-242 840.5 637 66.6
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.6e-241 839.0 637 66.4
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.6e-241 839.0 640 65.0
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 4.9e-240 834.7 637 66.2
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 4.9e-240 834.7 536 75.4
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.1e-239 833.6 668 63.8
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.2e-238 830.1 689 62.0
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.3e-237 826.6 637 65.9
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.7e-237 826.2 639 66.0
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 4.3e-236 821.6 675 62.5
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 4.3e-236 821.6 644 64.6
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 9.6e-236 820.5 642 65.3
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.6e-235 819.7 668 62.1
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 1.1e-234 817.0 644 64.4
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 1.1e-234 817.0 638 64.6
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.8e-234 816.2 649 64.3
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 2.4e-234 815.8 638 64.7
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 2.4e-234 815.8 637 66.6
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 5.2e-234 814.7 639 63.2
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 4.4e-233 811.6 639 62.9
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 2.2e-232 809.3 638 62.9
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.9e-232 808.9 601 66.4
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.9e-232 808.9 634 64.8
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 4.9e-232 808.1 633 64.9
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 2.4e-231 805.8 639 64.6
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 9.3e-231 803.9 640 65.3
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 2.1e-230 802.7 640 65.2
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 2.7e-230 802.4 637 64.8
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.5e-230 802.0 638 63.9
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.5e-230 802.0 638 63.6
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 3.9e-229 798.5 638 65.0
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 6.6e-229 797.7 640 63.1
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 8.7e-229 797.3 639 61.3
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.5e-228 796.6 649 62.9
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 3.3e-228 795.4 638 63.8
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 2.1e-227 792.7 664 63.0
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 8.1e-227 790.8 633 63.2
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 8.1e-227 790.8 658 61.1
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 5.3e-226 788.1 638 63.3
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 9.0e-226 787.3 571 68.5
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 7.6e-225 784.3 636 62.9
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 1.3e-224 783.5 636 63.4
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 3.8e-224 781.9 643 63.5
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 6.4e-224 781.2 637 62.5
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 8.4e-224 780.8 635 62.5
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 5.4e-223 778.1 637 64.5
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 9.3e-223 777.3 581 67.3
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 2.7e-222 775.8 657 60.9
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 1.3e-221 773.5 657 59.8
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.7e-221 773.1 639 62.8
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 6.6e-221 771.2 639 62.3
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.5e-220 769.2 638 61.3
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.3e-219 766.9 635 62.0
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.6e-219 766.5 634 61.8
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 4.8e-219 765.0 644 60.9
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 6.2e-219 764.6 583 66.2
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 2.4e-218 762.7 637 62.0
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 5.8e-217 758.1 637 61.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.2e-216 756.1 637 61.9
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 7.1e-215 751.1 631 60.9
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.9e-214 747.7 581 64.9
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 5.1e-213 745.0 638 59.2
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 8.7e-213 744.2 637 60.4
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 7.4e-212 741.1 580 64.7
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 6.9e-210 734.6 634 58.5
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 2.3e-205 719.5 638 59.7
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 4.8e-203 711.8 668 55.8
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 3.2e-199 699.1 627 56.0
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 6.9e-194 681.4 611 57.4
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 3.9e-181 639.0 546 59.3
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 5.9e-169 598.6 572 54.4
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 7.0e-162 575.1 675 47.4
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 7.0e-162 575.1 644 49.8
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.4e-157 560.8 493 59.4
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.9e-149 531.6 568 51.1
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 9.8e-148 528.1 554 52.2
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 5.0e-136 489.2 427 56.9
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 8.1e-126 455.3 629 42.6
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.9e-123 446.0 455 50.3
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 2.5e-119 433.7 614 41.9
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 2.6e-116 423.7 840 34.4
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.1e-114 418.3 391 58.1
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 1.3e-107 394.8 398 53.3
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 8.7e-104 382.1 567 39.9
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.6e-97 361.3 319 61.1
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 7.9e-97 359.0 302 63.2
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 2.5e-90 337.4 196 79.6
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 5.5e-90 336.3 204 84.3
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 6.7e-80 302.8 284 56.3
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 3.6e-65 253.8 628 32.2
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.7e-62 245.0 405 39.3
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 6.3e-62 243.0 226 54.0
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 8.5e-59 232.6 616 30.0
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 1.7e-54 218.4 144 71.5
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 1.2e-52 212.2 704 29.8
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 2.7e-52 211.1 120 87.5
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 9.4e-50 202.6 145 75.2
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 9.4e-50 202.6 655 30.2
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.8e-48 198.4 173 63.6
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.2e-47 195.7 263 46.4
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 3.5e-44 184.1 207 50.7
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.5e-42 176.0 272 41.9
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.8e-41 174.5 272 41.9
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 1.8e-40 171.8 140 67.1
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 1.0e-35 156.0 172 52.3
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.2e-31 142.5 277 37.2
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.5e-31 142.1 204 38.2
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 3.4e-31 141.0 90 71.1
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 3.2e-29 134.4 108 69.4
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.3e-27 128.3 230 38.7
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-27 126.7 230 38.3
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.6e-27 126.7 230 38.3
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-27 126.7 230 38.3
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-27 126.7 230 38.3
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 3.7e-22 110.9 65 89.2
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 3.2e-21 107.8 65 87.7
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.6e-20 105.5 162 42.0
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.7e-20 104.8 162 42.0
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.7e-20 104.8 173 41.6
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.5e-20 104.4 162 41.4
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 2.3e-11 75.1 49 69.4
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 5.1e-11 73.9 47 74.5
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 4.9e-06 57.4 68 44.1
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 6.4e-06 57.0 48 54.2


User provided reference genes

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