Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G014900 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 3.4e-141 505.0 252 100.0
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 6.7e-65 251.5 263 55.1
Glyma.07G134000 Glycine max HOM05D007762 ORTHO05D008066 1.5e-51 207.2 259 48.3
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 1.6e-50 203.8 259 48.6
Lalb_Chr19g0125241 Lupinus albus HOM05D007762 ORTHO05D008066 3.4e-48 196.1 263 46.4
Phvul.008G119100 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 4.5e-45 185.7 253 46.6
Psat3g137360 Pisum sativum HOM05D007762 ORTHO05D008066 3.7e-39 166.0 250 45.6
Medtr7g062260 Medicago truncatula HOM05D007762 ORTHO05D008066 2.0e-37 160.2 259 43.2
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 1.0e-36 157.9 266 42.1
TPR.G1723 Trifolium pratense HOM05D007762 ORTHO05D008066 3.8e-36 156.0 258 43.8
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 1.2e-34 151.0 264 39.8
arahy.Tifrunner.gnm1.ann1.LX2K9J Arachis hypogaea HOM05D007762 ORTHO05D008066 1.8e-33 147.1 257 40.5
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 6.3e-31 138.7 262 39.3
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 1.1e-30 137.9 264 37.5
TAR633G0209 Trochodendron aralioides HOM05D007762 ORTHO05D008066 5.4e-30 135.6 267 39.3
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 1.6e-29 134.0 251 36.7
GSVIVG01034144001 Vitis vinifera HOM05D007762 ORTHO05D008066 4.5e-29 132.5 264 37.5
Dinv37157 Davidia involucrata HOM05D007762 ORTHO05D008066 2.3e-28 130.2 262 35.9
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 2.5e-27 126.7 268 36.9
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 2.5e-27 126.7 258 36.8
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 7.3e-27 125.2 240 40.8
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 7.3e-27 125.2 268 41.0
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 1.2e-26 124.4 241 39.0
CsaV3_3G034800 Cucumis sativus L. HOM05D007762 ORTHO05D008066 2.8e-26 123.2 264 35.2
Actinidia11265 Actinidia chinensis HOM05D007762 ORTHO05D008066 1.8e-25 120.6 263 35.4
arahy.Tifrunner.gnm1.ann1.NCI3TY Arachis hypogaea HOM05D007762 ORTHO05D008066 2.3e-25 120.2 142 47.2
CiPaw.10G146800 Carya illinoinensis HOM05D007762 ORTHO05D008066 3.1e-25 119.8 264 37.1
ClCG10G021240 Citrullus lanatus HOM05D007762 ORTHO05D008066 3.1e-25 119.8 264 35.2
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 9.8e-24 114.8 259 35.9
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 1.3e-23 114.4 266 36.8
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 2.9e-23 113.2 258 34.5
vmacro20167 Vaccinium macrocarpon HOM05D007762 ORTHO05D008066 1.1e-22 111.3 260 36.2
Atru.chr8.1998 Acer truncatum HOM05D007762 ORTHO05D008066 4.1e-22 109.4 263 33.1
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 3.5e-21 106.3 242 36.8
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 3.5e-21 106.3 239 39.7
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 3.5e-21 106.3 264 35.2
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 3.5e-21 106.3 264 35.2
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 3.5e-21 106.3 238 38.2
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 4.6e-21 105.9 261 33.7
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 7.8e-21 105.1 239 39.7
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 1.0e-20 104.8 239 35.1
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.7e-20 104.0 240 39.6
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 2.3e-20 103.6 239 38.9
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 3.0e-20 103.2 259 34.7
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 3.0e-20 103.2 259 34.7
Sed0022945 Sechium edule HOM05D007762 ORTHO05D008066 5.0e-20 102.4 265 33.6
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 6.6e-20 102.1 263 32.3
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 8.6e-20 101.7 235 40.0
Rhsim05G0194300 Rhododendron simsii HOM05D007762 ORTHO05D008066 1.1e-19 101.3 249 31.7
MD12G1144400 Malus domestica HOM05D007762 ORTHO05D008066 5.6e-19 99.0 268 36.2
Eucgr.K03113 Eucalyptus grandis HOM05D007762 ORTHO05D008066 1.2e-18 97.8 263 31.9
Nitab4.5_0000527g0210 Nicotiana tabacum HOM05D007762 ORTHO05D008066 2.8e-18 96.7 245 37.6
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 3.6e-18 96.3 234 35.5
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 1.4e-17 94.4 265 32.1
Aqoxy1G00900 Aquilegia oxysepala HOM05D007762 ORTHO05D008066 1.8e-17 94.0 271 33.2
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 3.1e-17 93.2 243 33.7
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 4.0e-17 92.8 255 32.9
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 5.2e-17 92.4 237 34.6
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 8.9e-17 91.7 239 34.3
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 1.7e-15 87.4 250 35.2
Solyc10g086560.3 Solanum lycopersicum HOM05D007762 ORTHO05D008066 2.2e-15 87.0 235 34.5
Sopen10g035940 Solanum pennellii HOM05D007762 ORTHO05D008066 2.2e-15 87.0 235 34.9
MBI05_g29690_MAGBIO Magnolia biondii HOM05D007762 ORTHO05D008066 1.9e-14 84.0 254 29.9
Potri.016G100100 Populus trichocarpa HOM05D007762 ORTHO05D008066 3.2e-14 83.2 225 33.3
CAN.G92.14 Capsicum annuum HOM05D007762 ORTHO05D008066 2.1e-13 80.5 242 32.6
Cc06_g02460 Coffea canephora HOM05D007762 ORTHO05D008066 2.7e-13 80.1 246 31.3
PSO339G2571 Papaver somniferum HOM05D007762 ORTHO05D008066 1.3e-12 77.8 237 30.4
PGR004G1606 Punica granatum HOM05D007762 ORTHO05D008066 3.0e-12 76.6 272 29.8
Nn2g11166 Nelumbo nucifera HOM05D007762 ORTHO05D008066 4.3e-11 72.8 274 31.4
Lsat_1_v5_gn_9_33361 Lactuca sativa HOM05D007762 ORTHO05D008066 7.3e-11 72.0 225 30.7
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 7.3e-11 72.0 254 30.7
MSTRG.26781 Avicennia marina HOM05D007762 ORTHO05D008066 1.2e-10 71.2 235 31.1
MELO3C009249.2 Cucumis melo HOM05D007762 ORTHO05D008066 1.2e-10 71.2 232 28.0
Migut.J00315 Erythranthe guttata HOM05D007762 ORTHO05D008066 1.6e-10 70.9 232 28.9
FAN28G1746 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.6e-10 70.9 221 33.5
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 3.6e-10 69.7 257 30.7
DCAR_024059 Daucus carota HOM05D007762 ORTHO05D008066 1.8e-09 67.4 248 32.7
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 4.0e-09 66.2 240 30.0
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 8.9e-09 65.1 239 30.1
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 8.9e-09 65.1 54 66.7
Peaxi162Scf00165g00078 Petunia axillaris HOM05D007762 ORTHO05D008066 8.9e-09 65.1 267 27.0
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 1.5e-08 64.3 258 29.1
Duzib093G0438 Durio zibethinus HOM05D007762 ORTHO05D008066 1.5e-08 64.3 211 31.8
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 2.0e-08 63.9 238 29.0
MSTRG.5650 Avicennia marina HOM05D007762 ORTHO05D008066 5.8e-08 62.4 233 27.5
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 2.9e-07 60.1 42 71.4
Migut.L01955 Erythranthe guttata HOM05D007762 ORTHO05D008066 3.7e-07 59.7 226 29.6
AT5G02200 Arabidopsis thaliana HOM05D012592 ORTHO05D008066 8.3e-07 58.5 141 31.2
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 8.3e-07 58.5 137 33.6
PGSC0003DMG402019151 Solanum tuberosum HOM05D007762 ORTHO05D008066 8.3e-07 58.5 219 31.1
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 1.1e-06 58.2 134 35.8
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 1.4e-06 57.8 99 41.4
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 1.9e-06 57.4 87 43.7
Carub.0004s1962 Capsella rubella HOM05D005320 ORTHO05D008066 1.9e-06 57.4 242 27.3
ClCG04G008070 Citrullus lanatus HOM05D041730 ORTHO05D034779 2.4e-06 57.0 72 45.8
Manes.09G092300 Manihot esculenta HOM05D007762 ORTHO05D008066 3.2e-06 56.6 161 34.2
HanXRQChr01g0001221 Helianthus annuus HOM05D007762 ORTHO05D008066 4.1e-06 56.2 55 61.8
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 5.4e-06 55.8 238 29.8
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 7.1e-06 55.5 87 44.8
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 9.2e-06 55.1 161 31.7
Hund10692 Selenicereus undatus HOM05D021339 ORTHO05D008066 9.2e-06 55.1 230 28.3


User provided reference genes

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