Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G014600 Phaseolus vulgaris HOM05D006066 ORTHO05D007720 1.4e-248 862.4 419 100.0
VMungo0331G1521 Vigna mungo HOM05D006066 ORTHO05D007720 2.4e-216 755.4 420 86.9
Lj3g0025737 Lotus japonicus HOM05D006066 ORTHO05D007720 1.0e-187 660.2 419 76.6
Ca_26562_v3 Cicer arietinum L. HOM05D006066 ORTHO05D007720 6.4e-169 597.8 420 71.4
Lalb_Chr07g0194051 Lupinus albus HOM05D006066 ORTHO05D007720 5.9e-167 591.3 417 68.6
TPR.G5589 Trifolium pratense HOM05D006066 ORTHO05D007720 1.7e-166 589.7 419 68.7
Medtr4g022660 Medicago truncatula HOM05D006066 ORTHO05D007720 4.6e-159 565.1 420 66.9
Medtr7g026915 Medicago truncatula HOM05D006066 ORTHO05D007720 1.7e-158 563.1 420 66.9
Psat2g159600 Pisum sativum HOM05D006066 ORTHO05D007720 1.7e-153 546.6 420 66.2
Cfa008679 Carpinus fangiana HOM05D006066 ORTHO05D007720 2.5e-133 479.6 418 56.7
Prupe.8G204000 Prunus persica HOM05D006066 ORTHO05D007720 9.3e-128 461.1 420 55.2
Atru.chr11.2652 Acer truncatum HOM05D006066 ORTHO05D007720 1.1e-125 454.1 418 53.6
Ciclev10020152m.g Citrus clementina HOM05D006066 ORTHO05D007720 1.8e-123 446.8 418 52.9
CiPaw.01G110500 Carya illinoinensis HOM05D006066 ORTHO05D007720 3.1e-123 446.0 418 54.1
MD10G1165500 Malus domestica HOM05D006066 ORTHO05D007720 4.0e-123 445.7 421 53.2
Lj2C634T6 Lonicera japonica HOM05D006066 ORTHO05D007720 9.0e-123 444.5 419 52.7
RcHm_v2.0_Chr6g0284991 Rosa chinensis HOM05D006066 ORTHO05D007720 2.2e-121 439.9 420 53.6
FvH4_2g19201 Fragaria vesca HOM05D006066 ORTHO05D007720 4.9e-121 438.7 420 53.3
Gohir.A11G137000 Gossypium hirsutum HOM05D006066 ORTHO05D007720 2.4e-120 436.4 417 52.8
Gorai.007G153600 Gossypium raimondii HOM05D006066 ORTHO05D007720 9.3e-120 434.5 417 52.0
Cpa.g.sc8.165 Carica papaya HOM05D006066 ORTHO05D007720 1.2e-119 434.1 417 50.8
Potri.002G241366 Populus trichocarpa HOM05D006066 ORTHO05D007720 6.0e-119 431.8 415 51.8
Dinv09237 Davidia involucrata HOM05D006066 ORTHO05D007720 3.9e-118 429.1 420 51.4
Hma1.2p1_1061F.1_g253440 Hydrangea macrophylla HOM05D006066 ORTHO05D007720 8.7e-118 427.9 416 50.5
QL06p028105 Quercus lobata HOM05D006066 ORTHO05D007720 8.7e-118 427.9 515 47.2
TWI36G0510 Tripterygium wilfordii HOM05D006066 ORTHO05D007720 5.6e-117 425.2 409 53.5
TAR393G0002 Trochodendron aralioides HOM05D006066 ORTHO05D007720 1.4e-115 420.6 421 51.1
Lj2A644T10 Lonicera japonica HOM05D006066 ORTHO05D007720 1.3e-113 414.1 451 48.8
CSS0038727 Camellia sinensis var. sinensis HOM05D006066 ORTHO05D007720 1.1e-112 411.0 420 50.7
CSS0045030 Camellia sinensis var. sinensis HOM05D006066 ORTHO05D007720 1.1e-112 411.0 420 50.7
Cc01_g17160 Coffea canephora HOM05D006066 ORTHO05D007720 7.9e-111 404.8 416 47.8
Manes.11G092400 Manihot esculenta HOM05D006066 ORTHO05D007720 7.9e-111 404.8 419 51.1
Rhsim01G0256300 Rhododendron simsii HOM05D006066 ORTHO05D007720 1.0e-110 404.4 420 48.6
Hma1.2p1_1061F.1_g253450 Hydrangea macrophylla HOM05D006066 ORTHO05D007720 1.3e-110 404.1 383 51.4
ClCG07G001890 Citrullus lanatus HOM05D006066 ORTHO05D007720 1.5e-109 400.6 414 49.5
GSVIVG01028660001 Vitis vinifera HOM05D006066 ORTHO05D007720 4.3e-109 399.1 539 41.4
PGR119G0212 Punica granatum HOM05D006066 ORTHO05D007720 4.8e-108 395.6 417 48.0
CsaV3_3G029870 Cucumis sativus L. HOM05D006066 ORTHO05D007720 6.3e-108 395.2 418 49.3
COL.COLO4_07189 Corchorus olitorius HOM05D006066 ORTHO05D007720 1.4e-107 394.0 385 51.2
THA.LOC104818950 Tarenaya hassleriana HOM05D006066 ORTHO05D007720 2.9e-105 386.3 425 46.8
MELO3C026986.2 Cucumis melo HOM05D006066 ORTHO05D007720 6.5e-105 385.2 419 50.4
Sed0017682 Sechium edule HOM05D006066 ORTHO05D007720 2.5e-104 383.3 417 48.9
Nn1g07817 Nelumbo nucifera HOM05D006066 ORTHO05D007720 6.1e-103 378.6 417 48.2
vmacro14760 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 3.0e-102 376.3 424 45.8
Dinv01555 Davidia involucrata HOM05D006066 ORTHO05D007720 1.5e-101 374.0 348 54.3
arahy.Tifrunner.gnm1.ann1.50JBL9 Arachis hypogaea HOM05D006066 ORTHO05D007720 2.5e-101 373.2 416 48.1
Glyma.19G124200 Glycine max HOM05D006066 ORTHO05D007720 2.5e-101 373.2 214 83.2
Carub.0003s0657 Capsella rubella HOM05D006066 ORTHO05D007720 3.3e-101 372.9 423 44.4
Thhalv10020116m.g Eutrema salsugineum HOM05D006066 ORTHO05D007720 5.7e-101 372.1 426 43.7
AL3G18290 Arabidopsis lyrata HOM05D006066 ORTHO05D007720 7.4e-101 371.7 424 44.3
ECA236G0120 Erigeron canadensis HOM05D006066 ORTHO05D007720 7.4e-101 371.7 419 45.1
FAN15G1679 Fragaria x ananassa HOM05D006066 ORTHO05D007720 7.4e-101 371.7 414 48.8
Aqoxy2G03103 Aquilegia oxysepala HOM05D006066 ORTHO05D007720 1.7e-100 370.5 420 46.2
AT3G07060 Arabidopsis thaliana HOM05D006066 ORTHO05D007720 1.7e-100 370.5 424 44.6
CARHR081650 Cardamine hirsuta HOM05D006066 ORTHO05D007720 2.8e-100 369.8 431 44.5
CAN.G154.6 Capsicum annuum HOM05D006066 ORTHO05D007720 4.8e-100 369.0 420 46.2
FAN24G1416 Fragaria x ananassa HOM05D006066 ORTHO05D000168 4.8e-100 369.0 414 48.8
C05p60330 Brassica napus HOM05D006066 ORTHO05D007720 8.2e-100 368.2 421 44.4
Sp3g06000 Schrenkiella parvula HOM05D006066 ORTHO05D007720 1.8e-99 367.1 423 44.2
Eucgr.K03610 Eucalyptus grandis HOM05D006066 ORTHO05D007720 1.5e-98 364.0 417 45.3
HanXRQChr04g0110731 Helianthus annuus HOM05D006066 ORTHO05D007720 2.0e-98 363.6 419 45.6
Haze_11697 Corylus avellana HOM05D006066 ORTHO05D007720 1.3e-97 360.9 341 53.4
Sopen09g024200 Solanum pennellii HOM05D006066 ORTHO05D007720 1.3e-97 360.9 419 45.1
Solyc09g061380.3 Solanum lycopersicum HOM05D006066 ORTHO05D007720 1.7e-97 360.5 419 45.1
BolC5t34680H Brassica oleracea HOM05D006066 ORTHO05D007720 8.5e-97 358.2 422 44.1
Eucgr.L02049 Eucalyptus grandis HOM05D006066 ORTHO05D007720 8.5e-97 358.2 417 44.6
Nitab4.5_0000045g0020 Nicotiana tabacum HOM05D006066 ORTHO05D007720 8.5e-97 358.2 418 43.5
Aa31LG5G17620 Aethionema arabicum HOM05D006066 ORTHO05D007720 1.1e-96 357.8 472 41.1
Migut.D00528 Erythranthe guttata HOM05D006066 ORTHO05D007720 1.1e-96 357.8 417 44.8
Actinidia23727 Actinidia chinensis HOM05D006066 ORTHO05D007720 4.2e-96 355.9 364 48.6
AUR62008867 Chenopodium quinoa HOM05D006066 ORTHO05D007720 5.5e-96 355.5 420 44.0
EL10Ac7g17774 Beta vulgaris HOM05D006066 ORTHO05D007720 1.6e-95 354.0 421 43.9
Nitab4.5_0001872g0040 Nicotiana tabacum HOM05D006066 ORTHO05D007720 1.6e-95 354.0 415 43.9
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 2.1e-95 353.6 419 43.7
BcaC05g29836 Brassica carinata HOM05D006066 ORTHO05D000168 3.6e-95 352.8 441 42.4
Hund18348 Selenicereus undatus HOM05D006066 ORTHO05D007720 1.5e-93 347.4 415 42.4
arahy.Tifrunner.gnm1.ann1.9R7KTD Arachis hypogaea HOM05D006066 ORTHO05D007720 3.3e-93 346.3 413 46.0
BcaC05g29758 Brassica carinata HOM05D006066 ORTHO05D007720 1.7e-92 344.0 394 44.2
SGA_v2.0_scaffold8G04647 Striga asiatica HOM05D006066 ORTHO05D007720 2.0e-90 337.0 439 40.8
AUR62031844 Chenopodium quinoa HOM05D006066 ORTHO05D007720 7.7e-90 335.1 395 43.5
BraA05t22840Z Brassica rapa HOM05D006066 ORTHO05D000168 6.5e-89 332.0 397 42.8
PSO170G1150 Papaver somniferum HOM05D006066 ORTHO05D007720 1.1e-88 331.3 422 42.7
Duzib133G0184 Durio zibethinus HOM05D006066 ORTHO05D007720 2.5e-88 330.1 316 50.9
PSO782G0283 Papaver somniferum HOM05D006066 ORTHO05D007720 5.5e-88 328.9 422 42.9
Ah.08g213920 Amaranthus hybridus HOM05D006066 ORTHO05D007720 4.4e-85 319.3 423 42.1
A05p41140 Brassica napus HOM05D006066 ORTHO05D007720 7.4e-85 318.5 417 40.8
FAN27G1043 Fragaria x ananassa HOM05D006066 ORTHO05D007720 9.7e-85 318.2 381 47.5
SalBow6G7080 Salvia bowleyana HOM05D006066 ORTHO05D007720 1.4e-83 314.3 434 39.6
SGA_v2.0_scaffold586G53055 Striga asiatica HOM05D006066 ORTHO05D007720 2.2e-81 307.0 427 38.6
Thecc.01G227100 Theobroma cacao HOM05D006066 ORTHO05D007720 6.1e-79 298.9 266 53.4
Peaxi162Scf00107g01622 Petunia axillaris HOM05D006066 ORTHO05D007720 1.2e-77 294.7 435 40.2
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 2.3e-70 270.4 424 37.7
PSO674G0067 Papaver somniferum HOM05D006066 ORTHO05D007720 2.8e-68 263.5 331 42.0
Zm00001eb173150 Zea mays HOM05D006066 ORTHO05D007720 2.5e-64 250.4 422 33.4
MD05G1176900 Malus domestica HOM05D006066 ORTHO05D007720 1.7e-60 237.7 278 45.0
unitig_22.g5305 Utricularia gibba HOM05D006066 ORTHO05D007720 7.3e-56 222.2 420 34.0
CDE06G2585 Ceratophyllum demersum HOM05D006066 ORTHO05D007720 2.0e-53 214.2 414 31.6
Gohir.D11G143350 Gossypium hirsutum HOM05D006066 ORTHO05D007720 4.1e-51 206.5 212 46.2
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.0e-50 204.1 419 32.2
MSTRG.21426 Avicennia marina HOM05D006066 ORTHO05D007720 3.9e-49 199.9 218 45.9
SEGI_19430 Sequoiadendron giganteum HOM05D006066 ORTHO05D007720 4.4e-45 186.4 409 31.8
Sc24g0003620 Simmondsia chinensis HOM05D006066 ORTHO05D007720 1.6e-42 177.9 214 38.8
SHI34881 Sapria himalayana HOM05D006066 ORTHO05D007720 3.1e-38 163.7 340 32.4
Aqoxy5G00070 Aquilegia oxysepala HOM05D006066 ORTHO05D007720 1.5e-24 118.2 122 49.2
vmacro14757 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 2.6e-21 107.5 70 70.0
Mapoly0057s0011 Marchantia polymorpha HOM05D006066 ORTHO05D007720 2.9e-20 104.0 346 25.1
PGSC0003DMG400009670 Solanum tuberosum HOM05D006066 ORTHO05D007720 4.2e-19 100.1 121 43.8
Lsat_1_v5_gn_8_160280 Lactuca sativa HOM05D001279 ORTHO05D001636 6.2e-15 86.3 140 37.1
MSTRG.21425 Avicennia marina HOM05D006066 ORTHO05D007720 1.7e-12 78.2 91 40.7
Os08g0135300 Oryza sativa ssp. japonica HOM05D006066 ORTHO05D007720 2.7e-10 70.9 148 28.4
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 3.0e-09 67.4 59 50.8
Lsat_1_v5_gn_4_37140 Lactuca sativa HOM05D001279 ORTHO05D001636 1.9e-08 64.7 84 42.9
Lsat_1_v5_gn_5_64901 Lactuca sativa HOM05D001279 ORTHO05D001636 1.6e-07 61.6 70 47.1
Lsat_1_v5_gn_1_123760 Lactuca sativa HOM05D006066 ORTHO05D003550 2.1e-07 61.2 50 58.0


User provided reference genes

Program Settings