Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 6.6e-85 317.4 167 100.0
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 1.2e-57 226.9 171 77.2
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 3.4e-57 225.3 169 76.3
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 1.1e-55 220.3 170 73.5
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 5.7e-36 154.8 172 57.6
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 2.9e-32 142.5 170 52.4
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 3.7e-27 125.6 169 50.3
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 4.8e-27 125.2 169 52.1
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 1.4e-26 123.6 172 52.9
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 9.7e-20 100.9 169 43.8
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 1.8e-18 96.7 170 43.5
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 1.8e-18 96.7 170 43.5
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 9.1e-18 94.4 168 41.1
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.3e-16 90.5 176 39.8
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 1.3e-16 90.5 169 42.0
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 2.9e-16 89.4 172 42.4
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 6.5e-16 88.2 162 39.5
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 6.5e-16 88.2 128 43.0
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.5e-15 87.0 206 40.3
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 3.2e-15 85.9 163 39.3
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 7.2e-15 84.7 114 49.1
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 1.6e-14 83.6 164 41.5
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.1e-14 83.2 167 40.7
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 3.6e-14 82.4 114 48.2
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.0e-13 80.9 114 47.4
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.0e-13 80.9 169 40.8
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 1.4e-13 80.5 167 37.1
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.8e-13 80.1 162 39.5
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 4.0e-13 79.0 168 35.7
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 3.3e-12 75.9 172 39.0
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 7.5e-12 74.7 172 36.0
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 7.5e-12 74.7 160 39.4
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 7.5e-12 74.7 162 37.7
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.3e-11 73.9 161 36.0
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.7e-11 73.6 166 38.0
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.8e-11 72.8 111 45.0
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 4.8e-11 72.0 167 38.9
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 8.2e-11 71.2 161 36.0
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 1.1e-10 70.9 119 40.3
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 1.8e-10 70.1 160 36.9
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 5.3e-10 68.6 119 40.3
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 7.0e-10 68.2 165 37.0
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 7.0e-10 68.2 140 41.4
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 9.1e-10 67.8 162 35.8
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 9.1e-10 67.8 140 40.0
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.2e-09 67.4 167 35.9
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.2e-09 67.4 167 35.9
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.6e-09 67.0 165 36.4
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 2.7e-09 66.2 129 38.8
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 7.7e-09 64.7 134 37.3
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 1.0e-08 64.3 98 39.8
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 1.3e-08 63.9 48 58.3
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 1.3e-08 63.9 42 71.4
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.7e-08 63.5 71 49.3
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 2.2e-08 63.2 41 73.2
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 2.2e-08 63.2 164 36.0
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 3.8e-08 62.4 113 38.9
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 5.0e-08 62.0 58 51.7
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 5.0e-08 62.0 48 58.3
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 5.0e-08 62.0 48 58.3
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 5.0e-08 62.0 44 59.1
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 5.0e-08 62.0 140 38.6
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 6.5e-08 61.6 81 45.7
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 8.5e-08 61.2 48 58.3
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 8.5e-08 61.2 48 58.3
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 8.5e-08 61.2 59 52.5
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 1.1e-07 60.8 48 56.2
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.1e-07 60.8 169 35.5
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.5e-07 59.7 133 37.6
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 4.2e-07 58.9 81 43.2
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 5.5e-07 58.5 152 38.8
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 5.5e-07 58.5 170 34.7
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 1.2e-06 57.4 102 40.2
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 1.2e-06 57.4 110 35.5
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.1e-06 56.6 64 42.2
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 2.7e-06 56.2 139 34.5
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.7e-06 55.5 72 41.7
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.7e-06 55.5 42 61.9
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.7e-06 55.5 37 62.2
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 4.7e-06 55.5 132 34.8
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 8.0e-06 54.7 33 69.7


User provided reference genes

Program Settings