Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 8.9e-44 179.9 90 100.0
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 3.2e-25 118.2 86 74.4
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.2e-24 116.3 82 74.4
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 5.1e-23 110.9 76 68.4
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 1.1e-22 109.8 76 68.4
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.5e-22 108.6 76 68.4
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 3.3e-22 108.2 76 63.2
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.2e-21 106.3 77 62.3
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 2.8e-21 105.1 80 60.0
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 6.2e-21 104.0 76 64.5
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 8.1e-21 103.6 77 64.9
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 2.4e-20 102.1 77 61.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 5.2e-20 100.9 76 61.8
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 2.0e-19 99.0 75 68.0
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 1.3e-18 96.3 79 57.0
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.7e-18 95.9 79 57.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 2.2e-18 95.5 78 55.1
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.9e-17 92.4 80 60.0
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.5e-16 88.2 77 49.4
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.5e-16 88.2 77 49.4
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 3.5e-16 88.2 77 50.6
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 4.6e-16 87.8 72 56.9
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 6.0e-16 87.4 72 51.4
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.3e-15 86.3 77 48.1
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.7e-15 85.9 77 48.1
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.7e-15 85.9 72 52.8
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.0e-15 85.1 63 61.9
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 3.0e-15 85.1 63 61.9
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 5.1e-15 84.3 74 54.1
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 5.1e-15 84.3 74 54.1
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 8.7e-15 83.6 81 55.6
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 2.5e-14 82.0 73 50.7
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 4.3e-14 81.3 88 46.6
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 5.6e-14 80.9 70 58.6
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 7.3e-14 80.5 73 52.1
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 2.1e-13 79.0 72 51.4
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.1e-13 79.0 77 50.6
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.1e-13 79.0 77 54.5
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 6.2e-13 77.4 71 52.1
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 8.1e-13 77.0 76 52.6
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.1e-12 76.6 70 47.1
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.4e-12 75.5 66 50.0
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.1e-12 75.1 74 51.4
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.1e-12 75.1 74 51.4
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.0e-12 74.7 53 62.3
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.0e-12 74.7 74 51.4
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.9e-12 73.9 80 50.0
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 6.9e-12 73.9 75 49.3
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.9e-12 73.9 74 48.6
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.9e-12 73.9 66 48.5
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.2e-11 73.2 74 51.4
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.5e-11 72.8 75 49.3
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.5e-11 72.8 74 51.4
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.5e-11 72.8 74 52.7
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.0e-11 72.4 77 49.4
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.0e-11 72.4 53 60.4
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 2.6e-11 72.0 76 52.6
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.4e-11 71.6 75 52.0
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.8e-11 70.9 75 50.7
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.8e-11 70.9 75 50.7
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 7.6e-11 70.5 60 55.0
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.3e-10 69.7 75 49.3
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.3e-10 69.7 69 44.9
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.3e-10 69.7 69 44.9
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.7e-10 69.3 69 52.2
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 1.7e-10 69.3 70 48.6
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.7e-10 69.3 74 47.3
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.7e-10 69.3 56 53.6
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 2.2e-10 68.9 72 45.8
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.9e-10 68.6 80 47.5
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 3.8e-10 68.2 74 45.9
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 3.8e-10 68.2 72 47.2
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 4.9e-10 67.8 70 45.7
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 6.4e-10 67.4 77 48.1
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 6.4e-10 67.4 80 41.2
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 6.4e-10 67.4 71 49.3
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.4e-10 67.0 70 44.3
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.1e-09 66.6 70 47.1
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-09 66.2 74 44.6
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.4e-09 66.2 80 42.5
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 2.4e-09 65.5 55 50.9
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 2.4e-09 65.5 88 43.2
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 4.2e-09 64.7 71 42.3
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 4.2e-09 64.7 73 43.8
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 7.1e-09 63.9 62 51.6
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 7.1e-09 63.9 66 48.5
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 9.3e-09 63.5 52 53.8
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 9.3e-09 63.5 77 40.3
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 9.3e-09 63.5 86 38.4
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 9.3e-09 63.5 83 39.8
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 9.3e-09 63.5 52 48.1
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.2e-08 63.2 99 35.4
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.1e-08 62.4 70 47.1
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 2.1e-08 62.4 72 47.2
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 3.5e-08 61.6 97 39.2
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.6e-08 61.2 80 45.0
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 6.0e-08 60.8 66 47.0
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.8e-08 60.5 80 45.0
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.0e-07 60.1 39 66.7
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.3e-07 59.7 34 64.7
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.3e-07 59.7 55 50.9
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 1.3e-07 59.7 69 44.9
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.3e-07 59.7 75 42.7
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 1.1e-06 56.6 76 40.8
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 1.1e-06 56.6 78 41.0
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 1.5e-06 56.2 73 39.7
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 3.3e-06 55.1 72 44.4
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 4.3e-06 54.7 82 43.9
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 4.3e-06 54.7 58 41.4
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 5.6e-06 54.3 57 45.6
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 5.6e-06 54.3 47 46.8


User provided reference genes

Program Settings