Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.4e-211 736.9 400 100.0
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.7e-113 412.1 364 65.7
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.4e-48 198.0 391 40.7
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.0e-47 194.1 391 40.2
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 3.4e-47 193.4 388 41.0
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 9.4e-45 185.3 429 38.0
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 2.1e-44 184.1 377 39.5
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 3.1e-40 170.2 350 40.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 4.0e-35 153.3 409 35.2
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 8.8e-35 152.1 409 34.7
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.6e-31 141.4 412 36.7
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.3e-30 138.3 409 34.5
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.6e-28 130.2 426 35.0
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-27 128.3 431 35.0
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.2e-27 126.3 410 32.9
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.0e-26 124.4 406 32.8
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.7e-25 121.3 381 33.6
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.2e-23 115.2 409 32.5
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.2e-22 110.9 417 31.4
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 6.5e-22 109.4 409 34.0
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 4.7e-20 103.2 418 32.3
VMungo0331G1569 Vigna mungo HOM05D003730 ORTHO05D004458 4.4e-18 96.7 282 36.2
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 9.8e-18 95.5 429 28.9
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.8e-17 94.0 410 28.0
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 7.0e-16 89.4 410 28.5
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.5e-15 87.0 352 29.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 4.5e-15 86.7 417 27.8
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 7.8e-15 85.9 427 30.0
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 3.8e-14 83.6 417 28.1
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 5.0e-14 83.2 356 30.3
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-13 82.0 417 27.6
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.5e-13 81.6 426 27.7
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.5e-13 80.9 410 28.3
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.5e-13 80.9 391 29.2
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.3e-13 80.5 422 28.9
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.3e-13 80.5 418 28.0
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 4.3e-13 80.1 421 30.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.3e-13 80.1 103 45.6
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 7.3e-13 79.3 417 29.3
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 9.5e-13 79.0 404 27.7
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-12 78.6 103 43.7
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.2e-12 78.6 103 43.7
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.2e-12 78.6 396 28.0
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.1e-12 77.8 175 35.4
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.1e-12 77.8 375 29.9
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.1e-12 77.8 432 29.4
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.8e-12 77.4 426 27.7
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.8e-12 77.4 426 27.7
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.6e-12 77.0 210 33.3
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.6e-12 77.0 101 43.6
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 4.7e-12 76.6 421 27.8
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.7e-12 76.6 422 29.4
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 6.1e-12 76.3 434 27.4
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.0e-12 75.9 375 28.5
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-11 75.1 423 28.4
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.4e-11 75.1 104 40.4
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.4e-11 75.1 407 28.7
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.8e-11 74.7 418 27.0
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.8e-11 74.7 421 29.0
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.0e-11 73.9 101 40.6
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.0e-11 73.9 396 27.0
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.0e-11 73.9 411 27.7
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 3.0e-11 73.9 422 26.8
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 5.2e-11 73.2 322 28.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.0e-10 71.2 412 26.5
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.6e-10 70.9 428 28.5
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.6e-10 70.9 199 30.2
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 3.4e-10 70.5 100 41.0
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 3.4e-10 70.5 407 28.3
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 4.4e-10 70.1 148 37.2
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 4.4e-10 70.1 428 26.9
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.7e-10 69.7 390 28.2
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.7e-09 68.2 430 27.4
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.2e-09 67.8 418 27.0
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.2e-09 67.8 410 24.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.7e-09 67.0 298 26.8
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.7e-09 67.0 423 27.7
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 3.7e-09 67.0 418 26.1
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 3.7e-09 67.0 120 34.2
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 4.9e-09 66.6 321 27.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 6.4e-09 66.2 431 28.1
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 6.4e-09 66.2 414 27.1
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 6.4e-09 66.2 105 42.9
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-08 65.5 190 26.8
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-08 65.5 193 26.9
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.4e-08 65.1 101 39.6
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.8e-08 64.7 419 26.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.4e-08 64.3 440 26.4
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.2e-08 63.9 103 38.8
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.2e-08 63.9 103 38.8
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 3.2e-08 63.9 406 26.8
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.1e-08 63.5 430 27.4
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 4.1e-08 63.5 430 26.7
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 5.4e-08 63.2 396 29.0
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 7.0e-08 62.8 431 27.1
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 7.0e-08 62.8 411 25.1
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.2e-07 62.0 267 27.7
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.6e-07 61.6 429 26.3
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.6e-07 61.6 429 25.6
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.0e-07 61.2 206 27.2
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.7e-07 60.8 411 25.5
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 3.5e-07 60.5 392 26.5
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.5e-07 60.5 430 27.2
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.6e-07 60.1 429 25.4
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 4.6e-07 60.1 403 28.8
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 4.6e-07 60.1 439 26.0
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.6e-07 60.1 426 25.6
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.9e-07 59.7 132 31.8
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 7.8e-07 59.3 375 26.4
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-06 58.5 103 36.9
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.3e-06 58.5 122 32.8
VMungo1309G0044 Vigna mungo HOM05D014262 ORTHO05D018084 1.3e-06 58.5 372 26.1
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.3e-06 57.8 217 29.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.3e-06 57.8 74 48.6
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 3.9e-06 57.0 458 25.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 6.6e-06 56.2 98 39.8
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 8.6e-06 55.8 103 34.0


User provided reference genes

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