Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 2.3e-165 585.5 297 100.0
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.4e-90 336.3 297 65.0
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.9e-79 300.1 344 56.1
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.3e-78 297.4 348 56.6
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.0e-76 290.0 272 61.8
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 8.2e-54 214.9 278 49.3
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 4.8e-46 189.1 279 45.9
VMungo1309G0044 Vigna mungo HOM05D014262 ORTHO05D018084 5.3e-37 159.1 278 40.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.6e-28 131.0 219 41.1
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.6e-28 131.0 224 40.6
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.3e-27 127.1 219 40.2
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 8.6e-27 125.2 219 39.7
VMungo1309G1023 Vigna mungo HOM05D014262 ORTHO05D018084 5.5e-26 122.5 186 42.5
VMungo0029G0001 Vigna mungo HOM05D014262 ORTHO05D018084 4.4e-23 112.8 190 40.5
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.8e-22 110.2 310 32.6
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 7.0e-21 105.5 194 37.6
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.5e-20 103.2 303 30.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 3.9e-19 99.8 236 32.2
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 2.5e-18 97.1 280 32.1
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.6e-17 93.2 236 31.4
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 4.0e-16 89.7 187 36.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.2e-15 88.2 132 37.9
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.5e-15 87.8 230 30.4
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 2.6e-15 87.0 187 32.1
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.4e-15 86.3 237 32.9
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 5.8e-15 85.9 222 29.7
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 9.8e-15 85.1 219 31.1
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 3.7e-14 83.2 215 32.6
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.7e-14 83.2 121 42.1
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.3e-14 82.0 289 27.3
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.4e-13 80.5 103 39.8
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.2e-13 80.1 231 33.3
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.2e-13 80.1 316 28.5
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 4.1e-13 79.7 113 38.9
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 4.1e-13 79.7 113 39.8
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.1e-13 79.7 127 38.6
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 5.4e-13 79.3 212 31.6
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 7.0e-13 79.0 290 28.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 7.0e-13 79.0 165 33.3
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 7.0e-13 79.0 112 38.4
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 7.0e-13 79.0 119 37.0
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 7.0e-13 79.0 101 41.6
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 7.0e-13 79.0 226 29.2
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 9.2e-13 78.6 113 38.9
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 9.2e-13 78.6 198 32.3
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.2e-13 78.6 189 31.2
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.2e-12 78.2 230 30.0
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-12 77.8 119 37.0
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.6e-12 77.8 212 30.2
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.6e-12 77.8 100 42.0
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.0e-12 77.4 226 28.3
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.0e-12 77.4 206 30.6
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 2.0e-12 77.4 209 31.6
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.0e-12 77.4 307 28.3
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 2.7e-12 77.0 163 33.7
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.7e-12 77.0 232 27.6
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 3.5e-12 76.6 193 31.6
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.5e-12 76.6 101 37.6
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 3.5e-12 76.6 250 27.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.6e-12 76.3 221 28.5
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 6.0e-12 75.9 166 35.5
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 6.0e-12 75.9 298 26.8
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.0e-11 75.1 224 28.1
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.0e-11 75.1 203 32.0
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.0e-11 75.1 189 30.7
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-11 74.7 170 33.5
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.3e-11 74.7 220 30.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.3e-11 73.9 302 29.1
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 3.0e-11 73.6 228 28.5
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.9e-11 73.2 189 30.7
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 5.0e-11 72.8 189 28.6
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 5.0e-11 72.8 220 30.5
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 6.6e-11 72.4 113 37.2
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 6.6e-11 72.4 223 29.6
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 6.6e-11 72.4 220 29.5
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 8.6e-11 72.0 119 34.5
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.5e-10 71.2 282 26.6
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.9e-10 70.9 225 28.0
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.9e-10 70.9 239 26.4
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.9e-10 70.9 220 29.1
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.5e-10 70.5 153 32.7
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.3e-10 70.1 222 29.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 3.3e-10 70.1 113 36.3
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 3.3e-10 70.1 158 33.5
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 3.3e-10 70.1 181 28.7
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.3e-10 70.1 106 39.6
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 5.6e-10 69.3 273 26.0
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 7.3e-10 68.9 96 43.8
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 9.5e-10 68.6 314 25.5
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.2e-09 68.2 196 28.6
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.2e-09 68.2 220 28.6
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.1e-09 67.4 113 32.7
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.1e-09 67.4 106 35.8
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 2.8e-09 67.0 217 27.6
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.6e-09 66.6 224 29.5
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 4.7e-09 66.2 122 35.2
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 6.2e-09 65.9 234 25.6
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.0e-09 65.5 304 25.0
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.4e-08 64.7 286 25.2
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.4e-08 64.7 274 25.9
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.4e-08 64.7 222 28.8
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.4e-08 64.7 222 27.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.8e-08 64.3 202 28.7
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.8e-08 64.3 118 33.1
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.3e-08 63.9 222 27.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.3e-08 63.9 114 36.8
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.3e-08 63.9 127 33.1
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 3.1e-08 63.5 132 34.8
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.0e-08 63.2 276 26.4
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 4.0e-08 63.2 294 26.2
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 5.2e-08 62.8 300 24.3
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 5.2e-08 62.8 312 27.6
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.8e-08 62.4 188 29.8
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.8e-08 62.4 188 29.8
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.2e-07 61.6 126 31.0
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.5e-07 61.2 254 26.4
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.5e-07 61.2 153 31.4
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.5e-07 61.2 200 29.0
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.0e-07 60.8 104 34.6
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.0e-07 60.8 107 36.4
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.6e-07 60.5 290 26.6
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.6e-07 60.5 293 24.6
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.4e-07 60.1 276 23.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.4e-07 59.7 203 27.6
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 5.8e-07 59.3 296 24.7
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 5.8e-07 59.3 248 25.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.8e-07 59.3 119 30.3
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 5.8e-07 59.3 190 27.9
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 7.5e-07 58.9 217 27.6
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 7.5e-07 58.9 108 31.5
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 9.8e-07 58.5 215 27.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 9.8e-07 58.5 221 25.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.8e-07 58.5 110 28.2
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.9e-06 57.0 219 26.5
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.9e-06 57.0 220 28.6
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 2.9e-06 57.0 191 28.8
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 3.7e-06 56.6 273 24.5
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.7e-06 56.6 247 25.9
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.9e-06 56.2 123 29.3
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 6.4e-06 55.8 195 27.7


User provided reference genes

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