Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 7.3e-130 467.2 235 100.0
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 4.6e-116 421.4 235 90.2
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 7.8e-116 420.6 237 88.6
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 3.6e-113 411.8 235 87.7
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 5.8e-103 377.9 227 81.5
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 3.5e-100 368.6 229 78.6
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 4.8e-97 358.2 225 77.3
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 2.4e-96 355.9 227 78.4
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 1.7e-94 349.7 231 74.5
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 8.4e-94 347.4 228 72.8
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 1.6e-92 343.2 235 71.5
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 2.7e-92 342.4 232 72.8
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 1.0e-91 340.5 230 70.9
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 3.3e-90 335.5 226 72.1
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 1.3e-89 333.6 230 70.4
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 1.6e-89 333.2 234 70.1
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 2.8e-89 332.4 226 70.4
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 2.4e-88 329.3 226 69.5
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 3.1e-88 328.9 230 70.9
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 4.0e-88 328.6 226 69.5
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 6.9e-88 327.8 224 70.1
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 9.0e-88 327.4 234 69.7
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.2e-87 327.0 226 69.5
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 2.6e-87 325.9 234 68.8
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 4.5e-87 325.1 225 68.9
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 9.9e-87 323.9 227 68.3
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 1.7e-86 323.2 228 68.9
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 2.2e-86 322.8 226 70.4
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 3.8e-86 322.0 230 68.7
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 6.4e-86 321.2 213 72.3
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 6.4e-86 321.2 245 66.9
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 3.2e-85 318.9 230 67.4
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 4.2e-85 318.5 227 70.0
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 7.1e-85 317.8 230 67.8
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 7.1e-85 317.8 233 67.4
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 9.3e-85 317.4 230 67.8
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 9.3e-85 317.4 230 67.8
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 1.2e-84 317.0 230 66.5
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 1.6e-84 316.6 234 67.9
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 1.6e-84 316.6 225 69.3
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 2.1e-84 316.2 236 67.8
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 2.7e-84 315.8 234 67.1
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 3.5e-84 315.5 234 67.5
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 3.5e-84 315.5 234 67.9
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 3.5e-84 315.5 230 65.2
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 4.6e-84 315.1 223 69.5
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 4.6e-84 315.1 234 67.9
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 6.0e-84 314.7 232 67.7
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 1.3e-83 313.5 212 71.7
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 1.3e-83 313.5 225 68.0
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 5.1e-83 311.6 228 68.0
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 6.7e-83 311.2 226 69.9
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 1.5e-82 310.1 232 67.7
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 1.9e-82 309.7 229 68.1
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 2.5e-82 309.3 232 65.9
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 4.3e-82 308.5 230 64.3
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 5.6e-82 308.1 223 64.6
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 5.6e-82 308.1 222 68.0
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 5.6e-82 308.1 221 69.2
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 9.6e-82 307.4 235 66.0
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 9.6e-82 307.4 232 65.9
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 1.3e-81 307.0 232 66.4
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 1.3e-81 307.0 232 66.4
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 4.8e-81 305.1 230 64.8
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 6.2e-81 304.7 232 65.5
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 6.2e-81 304.7 226 68.1
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 8.1e-81 304.3 231 65.4
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 1.4e-80 303.5 230 64.8
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 2.4e-80 302.8 211 70.1
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 3.1e-80 302.4 230 65.2
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 6.9e-80 301.2 231 64.1
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 1.2e-79 300.4 234 64.1
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 2.6e-79 299.3 232 62.9
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 1.0e-78 297.4 235 63.0
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 2.2e-78 296.2 232 64.2
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 4.9e-78 295.0 230 64.3
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 4.9e-78 295.0 221 65.6
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 4.9e-78 295.0 232 62.9
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 1.2e-76 290.4 233 62.7
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 6.0e-76 288.1 233 63.1
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 1.0e-75 287.3 238 61.3
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 1.0e-75 287.3 231 61.5
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 5.1e-75 285.0 229 62.4
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 8.7e-75 284.3 236 61.0
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 1.3e-73 280.4 234 62.4
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 2.1e-73 279.6 222 62.2
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 3.7e-73 278.9 235 58.7
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 1.4e-72 276.9 213 62.9
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 1.8e-72 276.6 213 64.3
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 1.2e-71 273.9 216 58.8
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 2.0e-71 273.1 207 61.8
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 3.2e-69 265.8 218 60.1
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 3.1e-64 249.2 255 50.6
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 2.0e-63 246.5 227 56.8
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 1.8e-59 233.4 203 59.6
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 2.4e-56 223.0 151 72.8
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 1.2e-55 220.7 151 71.5
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 6.5e-54 214.9 226 48.7
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 7.2e-53 211.5 148 68.2
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 3.6e-44 182.6 211 41.7
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 4.0e-43 179.1 228 42.1
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 1.1e-42 177.6 118 75.4
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 1.7e-41 173.7 152 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 2.8e-41 172.9 226 42.0
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 4.8e-41 172.2 137 61.3
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 1.1e-40 171.0 225 46.2
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 8.0e-36 154.8 229 36.2
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 4.4e-34 149.1 217 35.0
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 5.7e-34 148.7 218 34.9
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.7e-31 139.8 89 74.2
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 5.5e-29 132.1 113 57.5
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 2.1e-28 130.2 158 45.6
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 3.8e-22 109.4 72 68.1
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 1.0e-19 101.3 202 31.2
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 8.0e-12 75.1 88 50.0
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 8.0e-12 75.1 88 50.0
MD15G1370600 Malus domestica HOM05D006862 ORTHO05D008726 1.4e-08 64.3 43 65.1
Rhsim07G0033200 Rhododendron simsii HOM05D006089 ORTHO05D007345 6.6e-06 55.5 37 64.9


User provided reference genes

Program Settings