Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.6e-161 572.0 290 100.0
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 3.3e-148 528.5 311 87.1
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.3e-141 506.5 290 89.0
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 3.0e-125 452.2 287 80.1
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 6.6e-125 451.1 310 75.5
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 4.5e-121 438.3 242 88.0
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.7e-120 436.4 241 89.2
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.4e-119 433.3 302 75.2
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 2.4e-119 432.6 241 88.4
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 5.5e-119 431.4 267 82.0
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 1.4e-111 406.8 283 71.7
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 1.9e-111 406.4 303 71.3
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 2.5e-111 406.0 272 73.9
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 5.5e-111 404.8 283 71.4
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 5.5e-111 404.8 250 80.4
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.6e-110 403.3 255 77.3
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 6.0e-110 401.4 283 71.0
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 7.9e-110 401.0 294 71.1
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.3e-109 400.2 289 73.0
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.3e-109 399.4 285 71.2
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 6.7e-109 397.9 301 68.8
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 6.7e-109 397.9 234 81.6
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 1.9e-108 396.4 255 76.1
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 2.5e-108 396.0 269 72.1
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 2.5e-108 396.0 281 71.5
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 2.5e-108 396.0 273 73.3
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 9.6e-108 394.0 235 79.6
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 1.6e-107 393.3 233 80.3
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.6e-107 393.3 273 72.2
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 3.7e-107 392.1 234 80.8
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 6.3e-107 391.3 233 79.4
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 1.4e-106 390.2 246 76.8
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 1.4e-106 390.2 282 69.9
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 5.3e-106 388.3 293 68.9
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 6.9e-106 387.9 255 74.1
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 9.0e-106 387.5 234 78.6
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 1.5e-105 386.7 248 77.0
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 2.0e-105 386.3 237 80.2
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 2.0e-105 386.3 247 74.5
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 3.4e-105 385.6 234 79.5
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 3.4e-105 385.6 265 73.6
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 4.5e-105 385.2 233 79.4
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.5e-105 385.2 251 72.5
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 7.6e-105 384.4 280 70.4
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 1.0e-104 384.0 242 76.0
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 1.3e-104 383.6 306 67.3
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 1.3e-104 383.6 245 75.5
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 1.7e-104 383.3 292 68.5
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 1.7e-104 383.3 276 71.4
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 3.8e-104 382.1 297 67.0
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 5.0e-104 381.7 248 75.0
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 6.5e-104 381.3 233 77.7
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 8.5e-104 380.9 235 76.2
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.4e-103 380.2 235 76.2
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 1.4e-103 380.2 236 76.3
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 2.5e-103 379.4 230 78.3
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 2.5e-103 379.4 235 75.7
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 3.2e-103 379.0 269 71.4
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 7.2e-103 377.9 260 70.8
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 9.3e-103 377.5 256 70.3
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 1.6e-102 376.7 303 66.3
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 2.1e-102 376.3 248 74.2
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 2.7e-102 375.9 235 75.7
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 3.6e-102 375.6 291 67.0
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 3.6e-102 375.6 232 79.3
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 6.1e-102 374.8 237 73.4
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 7.9e-102 374.4 235 75.7
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 1.0e-101 374.0 294 65.3
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.0e-101 374.0 235 74.0
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 1.3e-101 373.6 262 69.5
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 1.9e-100 369.8 236 73.3
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 1.9e-100 369.8 288 66.7
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 1.9e-100 369.8 235 72.8
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 3.3e-100 369.0 268 67.9
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 7.4e-100 367.9 233 75.1
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.8e-98 363.2 235 72.3
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 2.4e-98 362.8 238 74.4
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 2.4e-98 362.8 245 73.5
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 6.9e-98 361.3 236 72.9
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.2e-97 360.5 275 65.8
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 1.5e-97 360.1 316 61.1
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 7.7e-97 357.8 250 69.6
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 6.5e-96 354.8 235 72.3
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.1e-95 354.0 235 69.4
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 3.2e-95 352.4 278 66.2
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 5.5e-95 351.7 287 63.4
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 2.7e-94 349.4 295 61.7
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 2.7e-94 349.4 235 71.1
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 4.6e-94 348.6 233 70.0
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 6.7e-93 344.7 250 67.6
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 1.5e-92 343.6 249 68.7
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 2.6e-92 342.8 257 66.9
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 7.4e-92 341.3 235 68.1
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 4.1e-90 335.5 234 66.2
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 7.7e-89 331.3 238 66.0
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 7.7e-89 331.3 258 65.1
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 3.8e-88 328.9 219 70.8
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 1.4e-87 327.0 243 65.0
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 2.5e-87 326.2 235 66.4
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 3.2e-87 325.9 234 67.1
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 1.0e-85 320.9 219 67.6
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 2.3e-85 319.7 303 57.4
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.0e-85 319.3 234 64.1
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.0e-85 319.3 260 66.5
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 9.7e-84 314.3 234 65.8
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 1.3e-83 313.9 230 64.8
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.8e-83 312.8 253 60.5
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 2.9e-80 302.8 275 57.5
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.8e-80 302.4 235 59.1
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 5.5e-79 298.5 242 60.7
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.6e-78 297.0 269 62.1
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 1.8e-77 293.5 241 62.2
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.4e-74 283.9 247 59.1
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 5.0e-72 275.4 172 74.4
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 3.6e-70 269.2 237 61.6
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 2.3e-69 266.5 268 53.4
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 4.0e-69 265.8 182 67.0
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 2.6e-68 263.1 186 69.4
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 3.1e-66 256.1 227 56.8
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 1.3e-64 250.8 273 52.7
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.2e-63 246.1 193 65.8
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 7.2e-63 245.0 302 46.7
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 1.6e-62 243.8 246 56.5
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 7.5e-60 235.0 183 65.6
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 2.0e-57 226.9 230 55.2
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 1.7e-56 223.8 196 58.7
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 2.1e-54 216.9 201 60.2
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 3.0e-53 213.0 182 61.0
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 2.5e-47 193.4 120 70.0
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 5.6e-47 192.2 283 42.0
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 5.4e-42 175.6 240 45.0
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 1.2e-36 157.9 115 67.8
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.5e-36 157.5 270 43.3
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 5.4e-34 149.1 135 58.5
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 2.7e-33 146.7 101 70.3
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 3.1e-29 133.3 130 54.6
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 3.1e-29 133.3 101 65.3
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 4.1e-26 122.9 137 50.4
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 3.9e-24 116.3 71 74.6
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 1.4e-21 107.8 58 87.9
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 1.3e-14 84.7 58 65.5
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.2e-12 78.2 77 54.5
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.5e-12 76.3 54 64.8
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 5.8e-12 75.9 94 44.7
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 1.7e-11 74.3 57 61.4


User provided reference genes

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