Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 2.3e-102 375.6 184 100.0
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 1.9e-93 345.9 185 93.0
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 2.6e-82 308.9 185 86.5
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 3.5e-79 298.5 188 84.0
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 3.5e-71 271.9 187 75.9
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 3.5e-71 271.9 187 75.9
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 8.6e-70 267.3 186 74.7
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 4.0e-67 258.5 195 70.3
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.2e-66 256.9 189 72.5
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.3e-65 253.4 190 72.1
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 2.4e-64 249.2 197 68.0
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 5.4e-64 248.1 189 69.3
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 5.4e-64 248.1 196 68.4
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 9.3e-64 247.3 194 69.6
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.2e-63 246.9 192 70.3
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 6.0e-63 244.6 187 71.1
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 1.7e-62 243.0 193 72.5
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.7e-62 243.0 192 69.3
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.3e-62 242.7 193 68.9
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 3.0e-62 242.3 199 66.3
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 5.1e-62 241.5 193 72.0
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.1e-61 240.4 185 66.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 1.9e-61 239.6 191 70.2
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.3e-60 236.9 190 67.4
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.3e-60 236.9 193 66.8
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 1.6e-60 236.5 193 65.3
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 2.1e-60 236.1 197 65.0
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 2.8e-60 235.7 196 65.8
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.8e-60 235.0 185 62.7
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.1e-59 233.8 187 65.2
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 1.2e-58 230.3 200 64.5
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 9.9e-58 227.3 189 69.3
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 3.8e-57 225.3 193 65.8
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 1.1e-56 223.8 186 67.7
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.4e-56 222.6 194 61.9
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 6.0e-55 218.0 185 63.8
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 7.9e-55 217.6 197 60.9
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 2.3e-54 216.1 189 63.0
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.5e-53 213.4 185 63.2
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 3.3e-53 212.2 189 64.0
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.3e-53 212.2 189 64.0
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.3e-53 212.2 189 64.0
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 4.3e-53 211.8 193 63.2
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 7.3e-53 211.1 193 58.5
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.3e-52 210.3 202 60.4
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 3.6e-52 208.8 189 61.4
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 3.6e-52 208.8 186 60.8
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 3.6e-52 208.8 193 61.1
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.8e-52 208.4 185 61.1
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.4e-51 206.8 186 62.4
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 4.0e-51 205.3 193 60.6
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 2.0e-50 203.0 196 59.7
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 3.4e-50 202.2 197 59.4
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 4.5e-50 201.8 183 63.4
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 4.5e-50 201.8 196 58.2
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 5.8e-50 201.4 191 58.6
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 5.8e-50 201.4 168 64.3
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 9.9e-50 200.7 189 59.8
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 9.9e-50 200.7 186 58.6
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.2e-49 199.5 189 59.3
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.9e-49 199.1 186 58.1
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 8.4e-49 197.6 186 58.1
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.4e-48 196.1 185 57.3
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 9.3e-48 194.1 194 58.2
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.0e-46 190.7 194 57.7
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.8e-46 189.9 189 59.8
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.0e-46 189.1 208 57.7
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 5.1e-46 188.3 188 59.0
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 8.7e-46 187.6 197 55.3
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.5e-45 186.8 185 60.0
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 1.5e-45 186.8 186 59.7
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.9e-45 186.4 191 56.0
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.9e-45 186.4 193 56.5
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 7.4e-45 184.5 189 59.3
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 7.4e-45 184.5 188 58.5
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.6e-44 183.3 190 58.4
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.8e-44 182.6 197 55.3
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 3.7e-44 182.2 209 52.2
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.4e-43 180.3 198 57.6
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.4e-43 180.3 213 52.6
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.8e-43 179.9 209 56.0
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 3.1e-43 179.1 192 53.6
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 3.1e-43 179.1 193 58.5
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 6.9e-43 177.9 193 56.5
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 9.0e-43 177.6 190 57.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.5e-42 176.8 189 53.4
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.5e-42 176.8 190 52.6
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 2.6e-42 176.0 183 52.5
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.4e-42 175.6 190 52.6
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.5e-42 175.3 190 57.4
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 4.5e-42 175.3 197 56.3
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 4.5e-42 175.3 197 56.3
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 7.6e-42 174.5 193 56.0
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 7.6e-42 174.5 193 56.0
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.0e-41 174.1 210 54.8
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.7e-41 173.3 186 54.3
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 2.2e-41 172.9 122 71.3
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 4.9e-41 171.8 184 55.4
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 6.5e-41 171.4 185 56.2
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 3.2e-40 169.1 196 51.5
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 5.5e-40 168.3 195 54.9
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 9.3e-40 167.5 197 56.9
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.6e-39 166.8 196 56.1
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 2.7e-39 166.0 183 53.6
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 4.6e-39 165.2 197 52.8
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 6.0e-39 164.9 217 52.1
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 6.0e-39 164.9 217 52.1
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 1.0e-38 164.1 205 49.8
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 8.7e-38 161.0 195 54.4
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 8.7e-38 161.0 195 56.9
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.5e-37 160.2 195 56.4
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.5e-37 159.5 190 51.1
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 4.3e-37 158.7 193 56.0
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 4.3e-37 158.7 193 56.0
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 4.3e-37 158.7 193 56.0
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 4.3e-37 158.7 194 52.6
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 9.6e-37 157.5 199 53.3
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 3.7e-36 155.6 188 52.1
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 6.2e-36 154.8 175 53.1
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 8.2e-36 154.5 195 51.8
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 1.4e-35 153.7 220 50.5
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 1.8e-35 153.3 224 50.9
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 1.5e-34 150.2 203 50.2
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 2.2e-33 146.4 188 46.8
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.9e-33 146.0 206 50.5
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.1e-32 144.1 203 50.2
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.6e-31 140.2 207 45.4
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 4.6e-31 138.7 188 45.7
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 4.6e-31 138.7 199 46.7
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.0e-30 137.5 204 47.5
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.1e-27 125.9 185 41.6
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.2e-26 124.0 108 56.5
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 7.7e-26 121.3 187 42.2
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 6.5e-25 118.2 154 53.2
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 7.2e-24 114.8 179 39.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 1.8e-22 110.2 201 39.3
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 3.9e-22 109.0 90 65.6
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 3.9e-22 109.0 187 38.0
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 3.9e-22 109.0 81 76.5
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 5.7e-21 105.1 185 39.5
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.8e-20 102.1 157 38.9
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 7.7e-18 94.7 77 66.2
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 3.8e-17 92.4 74 63.5
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 7.4e-13 78.2 155 37.4
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 3.7e-12 75.9 188 30.3
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.4e-11 73.2 182 31.9
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 7.0e-11 71.6 38 78.9
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 2.0e-10 70.1 186 26.3
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 2.0e-10 70.1 185 30.3
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 5.9e-10 68.6 182 30.2
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 7.7e-10 68.2 188 31.9
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 1.3e-09 67.4 187 31.0
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 1.7e-09 67.0 187 25.1
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 2.2e-09 66.6 181 28.2
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 2.9e-09 66.2 183 28.4
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 3.8e-09 65.9 185 29.2
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 8.5e-09 64.7 183 32.2
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.5e-08 63.9 183 30.6
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 1.5e-08 63.9 191 33.0
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 1.9e-08 63.5 186 28.5
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 3.2e-08 62.8 190 33.7
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 4.2e-08 62.4 164 28.7
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 5.5e-08 62.0 186 28.5
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 7.2e-08 61.6 183 29.0
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 9.4e-08 61.2 186 29.6
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 9.4e-08 61.2 185 31.9
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.6e-07 60.5 185 31.4
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 1.6e-07 60.5 188 26.6
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 1.6e-07 60.5 188 27.7
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 2.1e-07 60.1 188 26.1
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 8.0e-07 58.2 187 29.4
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 8.0e-07 58.2 154 29.2
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 1.0e-06 57.8 186 28.0
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.8e-06 57.0 179 27.4
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 2.3e-06 56.6 182 26.9
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 2.3e-06 56.6 182 26.9
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 3.0e-06 56.2 179 27.4
Nn4g25860 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.0e-06 55.8 95 43.2
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 5.2e-06 55.5 182 29.7
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 5.2e-06 55.5 180 25.0
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 6.7e-06 55.1 164 26.8


User provided reference genes

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