Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 2150.9 1067 100.0
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 2013.4 1064 93.0
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1899.8 1062 88.2
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1771.1 1058 81.5
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1745.3 1066 80.2
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1739.5 1059 80.3
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1724.5 1013 82.2
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1724.5 1013 82.2
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1716.0 1031 80.8
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1711.8 1060 78.4
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1657.5 927 88.0
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1561.2 1045 72.6
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1539.2 1045 72.0
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1453.0 1054 67.2
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1419.4 1051 65.8
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1412.1 1062 65.9
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1355.1 1063 63.2
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1337.0 1039 63.4
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1327.0 1065 62.2
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1319.7 1069 61.5
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1305.8 1065 60.8
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1291.9 1084 60.3
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1278.8 1059 60.8
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1268.4 1062 60.0
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1248.0 1077 56.8
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1247.6 1046 59.7
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1245.3 1064 57.5
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1241.9 1065 60.1
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1240.7 1062 57.6
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1238.4 1068 58.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1236.1 1045 59.2
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1233.4 1058 57.4
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1224.5 1064 58.8
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1223.4 1081 57.9
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1215.7 1039 58.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1214.5 960 62.5
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 0.0e+00 1213.4 759 79.7
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1204.9 1093 55.5
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1198.0 1068 56.6
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1192.6 984 61.4
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1187.2 1055 56.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1169.1 1021 56.4
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1163.7 1125 53.4
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1148.7 1040 55.3
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1147.9 1058 54.3
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1145.6 1024 55.9
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1144.4 1062 54.2
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1139.0 1041 54.6
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1134.8 1025 54.8
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1132.5 1054 54.4
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1132.1 1055 54.3
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1128.6 1046 54.6
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1127.1 1090 52.6
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1125.9 1052 54.1
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1119.4 1060 53.9
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1111.7 1056 53.4
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1107.0 1047 54.1
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1104.7 1025 54.0
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1101.7 1054 52.9
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1100.9 1054 52.9
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1098.6 1056 53.0
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1094.3 984 55.1
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1089.7 1063 53.3
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1086.6 1032 53.7
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1086.2 1049 51.8
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1081.2 869 62.4
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1076.2 1010 52.5
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 7.3e-312 1074.3 1076 51.1
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.8e-308 1062.8 953 55.4
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 4.1e-305 1051.6 1005 53.6
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 1.2e-304 1050.0 1047 51.9
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.5e-302 1043.1 1045 51.0
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 4.7e-301 1038.1 978 52.5
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 4.2e-294 1015.0 770 64.9
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 6.1e-293 1011.1 1027 49.9
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.3e-292 1009.2 896 55.9
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 1.2e-291 1006.9 772 62.7
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.7e-287 993.0 879 57.7
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 5.0e-287 991.5 896 54.9
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.1e-278 963.8 1095 46.3
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.0e-275 953.0 885 55.7
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.6e-269 933.3 1031 47.3
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 7.5e-267 924.5 1022 47.0
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.1e-260 904.0 1020 47.5
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 1.4e-249 867.1 1042 46.4
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 8.7e-247 857.8 918 50.0
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 6.9e-244 848.2 694 61.0
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.0e-234 817.8 992 43.4
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.6e-232 810.4 699 58.2
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 4.6e-224 782.3 732 54.1
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 8.2e-221 771.5 1037 39.9
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 2.0e-219 766.9 660 58.3
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.3e-214 749.6 546 66.1
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 3.3e-206 723.0 1033 40.7
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 5.9e-203 712.2 604 57.1
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 9.2e-172 608.6 645 48.8
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 8.3e-165 585.5 494 58.9
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 8.1e-160 568.9 582 48.6
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 1.5e-126 458.4 353 61.8
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 5.8e-118 429.9 333 62.5
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-109 402.1 383 52.2
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.4e-100 372.1 345 55.1
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 5.0e-93 347.1 208 79.3
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.5e-84 318.2 191 79.1
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.7e-83 313.9 1040 26.8
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 6.5e-77 293.5 218 62.8
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 8.0e-75 286.6 220 61.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 7.7e-70 270.0 223 57.4
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 3.0e-66 258.1 318 43.7
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.2e-62 246.1 261 46.0
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 9.2e-55 219.9 179 58.1
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.9e-54 217.2 179 58.7
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.5e-52 211.8 179 57.5
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.6e-51 208.0 179 56.4
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 1.0e-50 206.5 128 75.8
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.8e-50 205.7 910 24.1
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.2e-49 203.0 370 33.2
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 5.8e-41 174.1 130 64.6
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 1.4e-39 169.5 206 39.8
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-36 159.5 127 61.4
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.9e-36 159.1 115 60.0
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.5e-33 149.4 130 52.3
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 3.8e-32 144.8 134 52.2
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 2.4e-31 142.1 154 46.1
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 9.2e-31 140.2 84 81.0
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.2e-30 139.8 602 24.3
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 6.0e-30 137.5 528 22.5
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.7e-29 136.0 994 22.3
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 1.2e-25 123.2 137 47.4
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 2.0e-25 122.5 302 32.1
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.6e-25 122.1 128 50.0
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.3e-20 105.1 363 25.3
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.3e-18 97.8 933 20.8
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 5.3e-18 97.8 92 46.7
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 2.0e-17 95.9 81 49.4
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 9.9e-17 93.6 95 45.3
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.2e-16 92.4 478 21.3
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.1e-15 87.4 294 24.1
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 9.6e-12 77.0 58 55.2
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-11 76.6 224 25.4
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 2.8e-11 75.5 58 53.4
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.0e-10 71.6 100 40.0
Glyma.09G140050 Glycine max HOM05D005069 ORTHO05D006024 2.0e-09 69.3 45 77.8
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.4e-08 64.3 57 45.6


User provided reference genes

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