Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 0.0e+00 1334.7 667 100.0
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 0.0e+00 1174.1 664 89.6
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 0.0e+00 1130.9 676 84.8
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 1.8e-295 1018.8 674 77.3
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 4.0e-290 1001.1 677 75.6
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 4.9e-280 967.6 674 74.9
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 2.1e-267 925.6 674 71.1
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 2.5e-260 902.1 675 69.9
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 7.1e-255 884.0 675 68.6
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 4.2e-231 805.1 684 61.8
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 9.6e-228 793.9 609 68.6
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 5.5e-223 778.1 683 61.2
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 5.5e-223 778.1 705 60.6
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.6e-222 776.5 686 60.2
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 7.9e-222 774.2 630 62.7
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 6.7e-221 771.2 686 58.6
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 6.7e-221 771.2 625 62.1
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 8.2e-219 764.2 604 63.7
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.8e-218 763.1 687 59.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.4e-218 762.7 634 61.2
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.2e-217 760.4 683 59.4
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-217 760.4 675 59.9
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.0e-216 757.3 669 60.2
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.0e-216 757.3 605 64.0
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 3.8e-216 755.4 643 61.7
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 5.0e-216 755.0 659 59.8
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 5.5e-215 751.5 583 63.6
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 7.1e-215 751.1 666 59.8
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 6.1e-214 748.0 629 62.3
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 7.9e-214 747.7 589 63.2
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.8e-213 746.5 613 61.2
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.5e-212 742.7 621 61.8
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 4.3e-212 741.9 661 58.9
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 2.2e-211 739.6 640 59.1
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 2.8e-211 739.2 588 62.9
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 3.7e-211 738.8 664 59.0
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 1.4e-210 736.9 694 56.5
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.8e-210 736.5 567 64.2
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.2e-209 733.8 637 60.1
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 5.9e-209 731.5 645 61.6
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.7e-208 729.9 674 58.2
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 1.1e-207 727.2 661 58.1
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.1e-207 727.2 545 65.5
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 3.2e-207 725.7 596 61.7
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 4.2e-207 725.3 661 56.7
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 3.6e-206 722.2 693 55.4
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.4e-205 720.3 680 56.9
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 2.3e-205 719.5 645 59.1
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 4.3e-204 715.3 654 56.6
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 3.7e-203 712.2 678 56.3
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.1e-199 700.7 670 55.4
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 1.9e-199 699.9 648 56.6
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 5.5e-199 698.4 674 56.5
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 4.7e-198 695.3 590 58.8
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 4.7e-198 695.3 668 56.4
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.0e-197 694.1 639 55.4
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 1.8e-197 693.3 648 55.7
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 1.1e-196 690.6 676 54.7
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 1.3e-195 687.2 589 58.6
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 2.8e-195 686.0 632 55.1
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 3.7e-195 685.6 593 57.5
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 4.8e-195 685.3 643 55.1
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.4e-194 683.7 641 54.8
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.2e-193 680.6 676 53.8
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.5e-193 678.7 702 52.7
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 2.2e-192 676.4 619 57.5
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.2e-192 676.4 577 59.3
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 2.7e-190 669.5 395 85.1
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 3.6e-190 669.1 584 58.4
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 8.0e-190 667.9 785 49.3
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 3.0e-189 666.0 633 55.5
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.0e-184 651.0 633 54.0
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.1e-183 647.5 966 42.3
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 8.0e-182 641.3 682 51.6
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.0e-181 641.0 631 53.2
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 5.4e-178 628.6 543 58.4
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 7.7e-177 624.8 610 54.9
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.0e-176 624.4 649 52.2
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.2e-175 619.0 592 55.4
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 9.4e-175 617.8 608 54.1
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.8e-173 613.6 678 48.8
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 5.2e-173 612.1 653 51.0
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.6e-169 600.5 685 49.2
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.5e-164 583.9 683 48.3
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.7e-163 580.5 667 51.6
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 3.7e-163 579.3 741 47.9
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 7.0e-162 575.1 641 50.2
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 3.4e-156 556.2 561 51.2
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.3e-155 554.3 666 47.3
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.2e-155 553.5 723 46.3
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 6.6e-152 542.0 568 48.2
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 1.5e-151 540.8 569 51.1
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.1e-150 537.0 623 46.9
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 9.2e-146 521.5 705 45.7
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.3e-144 517.7 575 49.6
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 2.3e-144 516.9 377 66.0
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 9.9e-140 501.5 378 64.0
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 3.9e-136 489.6 658 41.6
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 1.8e-133 480.7 512 52.1
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 3.5e-121 439.9 312 73.1
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.2e-113 414.8 457 53.4
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.8e-112 411.0 619 42.0
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 1.5e-111 407.9 579 42.7
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.1e-109 401.7 304 71.1
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 6.9e-109 399.1 292 64.0
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.2e-107 394.0 347 58.2
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 3.8e-107 393.3 309 61.8
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 6.5e-107 392.5 320 61.2
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 3.9e-104 383.3 329 58.7
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 4.2e-98 363.2 481 43.2
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 9.7e-95 352.1 437 42.3
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.8e-93 347.8 345 53.0
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 1.5e-92 344.7 516 39.7
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.4e-88 331.6 506 37.9
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.4e-82 311.6 487 45.2
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 3.2e-82 310.5 332 53.3
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 2.6e-76 290.8 638 32.6
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 3.2e-74 283.9 193 78.8
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 2.7e-73 280.8 297 56.2
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 6.7e-72 276.2 570 31.6
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.4e-64 251.9 209 58.9
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 2.3e-64 251.1 402 42.5
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 6.3e-62 243.0 287 48.1
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 9.1e-61 239.2 155 72.9
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.0e-60 238.0 151 75.5
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 1.3e-59 235.3 151 76.2
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.7e-54 218.4 146 67.8
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.3e-54 216.1 134 73.1
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 3.5e-52 210.7 270 46.7
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 5.9e-52 209.9 285 46.0
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 4.4e-47 193.7 283 43.5
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.6e-42 176.8 194 49.5
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.2e-39 169.1 273 38.8
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.7e-38 165.2 265 42.6
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 4.1e-37 160.6 332 38.9
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 7.0e-37 159.8 118 67.8
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.1e-33 148.3 91 75.8
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 1.4e-32 145.6 281 36.7
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 2.3e-32 144.8 83 83.1
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.0e-31 141.7 83 78.3
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.4e-23 114.4 69 78.3
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.6e-23 113.2 91 59.3
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.7e-22 112.1 104 55.8
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 7.1e-21 106.7 69 73.9
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 6.0e-20 103.6 315 30.8
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.1e-19 100.5 104 55.8
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 8.6e-19 99.8 86 61.6
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 9.6e-18 96.3 155 38.7
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.6e-17 94.4 91 56.0
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.8e-16 92.0 210 37.1
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.4e-13 80.5 94 51.1
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.5e-10 71.6 77 48.1
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 7.3e-10 70.1 96 43.8
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 3.8e-06 57.8 43 60.5


User provided reference genes

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