Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 1.7e-160 569.3 294 100.0
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 7.4e-148 527.3 296 93.2
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 1.3e-131 473.4 295 85.1
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 4.5e-129 464.9 303 83.8
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 3.1e-114 415.6 299 77.6
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 3.8e-112 408.7 304 75.0
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 8.5e-112 407.5 299 77.3
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 3.0e-109 399.1 292 75.7
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.1e-106 390.6 293 76.5
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 7.7e-105 384.4 303 73.3
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 7.8e-97 357.8 312 67.0
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 2.3e-93 346.3 296 67.9
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 2.6e-92 342.8 284 68.0
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 3.4e-92 342.4 296 67.2
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.4e-90 336.3 291 66.0
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 2.4e-90 336.3 291 66.0
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 3.2e-90 335.9 291 66.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 6.6e-88 328.2 277 66.4
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.5e-87 326.2 263 66.9
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 7.3e-87 324.7 294 65.3
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 2.1e-86 323.2 300 63.7
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 6.2e-86 321.6 302 61.6
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 8.1e-86 321.2 284 64.4
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 6.8e-85 318.2 296 65.2
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 4.4e-84 315.5 299 63.5
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.6e-81 307.0 298 60.7
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 8.6e-80 301.2 303 61.7
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 8.6e-80 301.2 297 60.3
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.5e-79 299.7 285 61.1
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 4.3e-79 298.9 290 60.7
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 7.3e-79 298.1 398 49.2
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.2e-78 297.4 299 59.9
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.8e-78 296.2 293 59.0
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 8.1e-78 294.7 298 60.4
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.1e-77 294.3 291 60.8
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 5.2e-77 292.0 298 60.7
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 5.2e-77 292.0 293 59.4
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.4e-76 289.3 297 58.6
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 7.6e-76 288.1 264 65.9
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.2e-75 286.6 285 61.1
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.8e-75 285.8 295 60.0
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.8e-75 285.8 295 60.0
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.1e-74 284.3 291 59.8
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 1.4e-74 283.9 275 60.7
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.4e-74 283.9 198 79.8
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.4e-74 283.9 294 59.9
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 1.9e-74 283.5 281 62.6
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 7.1e-74 281.6 290 59.0
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 9.2e-74 281.2 300 56.3
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 3.5e-73 279.3 294 58.5
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.0e-72 277.7 293 58.7
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.0e-72 277.7 297 57.9
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.3e-72 277.3 301 55.8
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 1.7e-72 276.9 285 55.4
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.3e-72 276.6 282 59.2
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 3.0e-72 276.2 291 57.0
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 3.0e-72 276.2 296 58.8
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 3.0e-72 276.2 312 58.0
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 3.0e-72 276.2 304 61.5
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.1e-71 274.2 280 59.3
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-71 274.2 279 57.7
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.5e-71 273.9 297 57.6
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.5e-71 273.9 297 57.6
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 2.5e-71 273.1 310 54.2
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.7e-70 268.9 292 55.1
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 6.2e-70 268.5 296 54.4
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.4e-69 267.3 247 59.1
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 1.8e-69 266.9 276 55.4
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.1e-69 266.2 285 58.6
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 3.1e-69 266.2 296 53.4
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 4.0e-69 265.8 290 55.9
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 6.9e-69 265.0 284 54.9
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.6e-68 263.1 300 55.7
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.6e-68 263.1 290 55.5
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 4.4e-68 262.3 285 55.4
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 4.4e-68 262.3 295 56.6
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 5.8e-68 261.9 275 57.8
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.7e-67 260.4 285 55.8
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.7e-67 260.4 300 52.3
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 2.9e-67 259.6 269 56.9
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.9e-67 259.6 261 56.3
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.9e-67 258.8 289 57.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.1e-66 257.7 304 52.0
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.9e-66 256.9 277 57.8
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.2e-66 256.1 290 55.2
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 9.3e-66 254.6 283 57.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 1.2e-65 254.2 286 58.0
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 3.5e-65 252.7 264 56.1
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 6.0e-65 251.9 272 55.1
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 7.8e-65 251.5 287 53.3
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.3e-64 250.8 269 56.1
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.7e-64 250.4 294 56.8
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 5.1e-64 248.8 276 59.1
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 5.1e-64 248.8 290 53.8
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 6.6e-64 248.4 295 53.6
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 6.6e-64 248.4 267 54.7
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 2.5e-63 246.5 266 55.6
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.3e-62 244.2 278 56.1
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 5.3e-61 238.8 294 52.0
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.4e-58 230.7 277 53.4
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 2.4e-58 229.9 245 60.4
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-57 227.6 287 53.3
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-55 221.1 249 56.2
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 9.6e-55 218.0 300 51.0
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.3e-54 217.6 228 55.3
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.6e-54 217.2 300 51.7
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 3.6e-54 216.1 303 46.5
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 3.6e-54 216.1 283 53.0
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 8.1e-54 214.9 286 51.0
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-53 214.5 277 51.3
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 2.6e-52 209.9 280 50.7
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.2e-51 206.8 296 45.9
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 4.9e-51 205.7 297 47.1
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 7.1e-50 201.8 263 49.4
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 3.9e-48 196.1 283 46.6
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 5.1e-48 195.7 252 51.2
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.5e-47 194.1 295 45.4
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 3.9e-40 169.5 243 46.9
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.1e-39 167.9 151 65.6
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 3.3e-39 166.4 163 58.9
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.3e-39 166.4 248 45.6
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 9.6e-39 164.9 184 59.2
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 5.3e-37 159.1 251 44.6
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 9.0e-37 158.3 233 47.6
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 5.9e-36 155.6 298 41.6
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 3.8e-35 152.9 294 37.1
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 9.3e-34 148.3 269 38.7
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 7.9e-33 145.2 225 42.7
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.8e-32 144.1 305 36.1
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.1e-29 134.8 270 38.5
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 4.5e-28 129.4 286 37.4
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 6.5e-27 125.6 102 70.6
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 6.5e-27 125.6 211 43.6
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-20 104.8 258 35.7
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 7.7e-20 102.1 170 40.6
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 5.2e-16 89.4 74 73.0
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 5.7e-15 85.9 111 47.7
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 5.9e-12 75.9 74 51.4
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 7.2e-10 68.9 92 44.6
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 9.4e-10 68.6 137 41.6
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 6.1e-09 65.9 90 46.7
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 6.7e-08 62.4 77 46.8
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 4.4e-07 59.7 57 52.6
A02p05200 Brassica napus HOM05D059425 ORTHO05D041380 4.8e-06 56.2 78 42.3
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 8.2e-06 55.5 119 32.8


User provided reference genes

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