Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G236000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 8.6e-94 347.1 184 100.0
VMungo1309G0611 Vigna mungo HOM05D003556 ORTHO05D003404 1.4e-75 286.6 181 79.0
Phvul.001G208700 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.3e-73 280.0 196 75.0
Phvul.001G209000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.4e-72 275.8 192 75.0
Phvul.001G208900 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.6e-71 273.1 196 73.0
Phvul.001G208800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 6.6e-70 267.7 196 69.9
Glyma.19G212200 Glycine max HOM05D003556 ORTHO05D003404 1.9e-69 266.2 185 75.7
Phvul.001G208600 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 3.6e-68 261.9 194 71.1
Glyma.03G215700 Glycine max HOM05D003556 ORTHO05D003404 2.0e-66 256.1 185 71.9
VMungo1383G2652 Vigna mungo HOM05D003556 ORTHO05D003404 1.3e-60 236.9 186 69.4
VMungo1383G0005 Vigna mungo HOM05D003556 ORTHO05D003404 4.8e-60 235.0 190 68.9
Lalb_Chr04g0259851 Lupinus albus HOM05D003556 ORTHO05D003404 2.6e-58 229.2 176 68.2
VMungo0331G0621 Vigna mungo HOM05D003556 ORTHO05D003404 1.7e-57 226.5 178 70.8
Lj1g0023613 Lotus japonicus HOM05D003556 ORTHO05D003404 2.3e-54 216.1 179 63.7
Lalb_Chr15g0078461 Lupinus albus HOM05D003556 ORTHO05D003404 1.1e-53 213.8 175 64.0
Psat0s1683g0040 Pisum sativum HOM05D003556 ORTHO05D003404 3.1e-51 205.7 178 60.7
Medtr7g108865 Medicago truncatula HOM05D003556 ORTHO05D003404 2.2e-49 199.5 174 60.9
Ca_09185_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 2.9e-49 199.1 161 63.4
TPR.G9645 Trifolium pratense HOM05D003556 ORTHO05D003404 1.4e-48 196.8 175 61.7
Phvul.007G246800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 7.1e-48 194.5 177 57.6
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 2.1e-47 193.0 177 57.1
Lalb_Chr02g0146451 Lupinus albus HOM05D003556 ORTHO05D003404 4.6e-47 191.8 167 58.7
Medtr4g071020 Medicago truncatula HOM05D003556 ORTHO05D003404 5.1e-46 188.3 175 58.9
VMungo1309G2342 Vigna mungo HOM05D003556 ORTHO05D003404 3.3e-45 185.7 175 56.6
Lj5g0004990 Lotus japonicus HOM05D003556 ORTHO05D003404 4.3e-45 185.3 170 54.7
Glyma.10G017300 Glycine max HOM05D003556 ORTHO05D003404 2.1e-44 183.0 181 54.1
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 2.4e-43 179.5 172 55.2
Ca_20910_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 4.0e-43 178.7 151 60.3
Glyma.02G016700 Glycine max HOM05D003556 ORTHO05D003404 1.2e-42 177.2 178 51.1
Psat7g183080 Pisum sativum HOM05D003556 ORTHO05D003404 1.5e-42 176.8 142 62.0
Lalb_Chr06g0166521 Lupinus albus HOM05D003556 ORTHO05D003404 5.8e-42 174.9 173 53.8
arahy.Tifrunner.gnm1.ann1.HDU51Y Arachis hypogaea HOM05D003556 ORTHO05D003404 1.5e-37 160.2 185 45.4
arahy.Tifrunner.gnm1.ann1.GMFP2F Arachis hypogaea HOM05D003556 ORTHO05D003404 2.5e-37 159.5 185 45.4
CANSAT25G1336 Cannabis sativa HOM05D003556 ORTHO05D003404 3.0e-22 109.4 151 38.4
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 8.8e-22 107.8 177 35.0
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.1e-21 107.5 177 34.5
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 3.3e-21 105.9 175 37.1
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 2.8e-20 102.8 177 34.5
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 1.4e-19 100.5 180 33.3
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 2.4e-19 99.8 163 35.6
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 6.9e-19 98.2 186 31.7
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.5e-18 97.1 149 34.9
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 1.5e-18 97.1 162 38.3
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 1.5e-18 97.1 152 34.9
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 5.9e-18 95.1 174 34.5
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 3.8e-17 92.4 151 35.8
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 3.8e-17 92.4 181 33.7
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 5.0e-17 92.0 172 34.9
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 5.0e-17 92.0 147 36.7
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 8.5e-17 91.3 144 34.7
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 8.5e-17 91.3 144 34.7
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.1e-16 90.9 144 34.7
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.9e-16 90.1 144 34.0
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 2.5e-16 89.7 177 31.6
MD03G1290800 Malus domestica HOM05D003556 ORTHO05D003404 4.2e-16 89.0 143 34.3
AL1G63880 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 9.4e-16 87.8 173 31.2
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 3.6e-15 85.9 154 31.8
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 4.7e-15 85.5 144 34.0
A06p00030 Brassica napus HOM05D003556 ORTHO05D003404 6.1e-15 85.1 181 29.3
BraA06t23219Z Brassica rapa HOM05D003556 ORTHO05D003404 6.1e-15 85.1 181 29.3
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 7.9e-15 84.7 170 30.0
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 1.4e-14 84.0 180 30.0
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 1.8e-14 83.6 146 30.8
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 1.8e-14 83.6 148 33.8
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 2.3e-14 83.2 150 32.7
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 2.3e-14 83.2 174 28.2
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 2.3e-14 83.2 180 31.7
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 3.0e-14 82.8 171 32.2
BcaC08g44217 Brassica carinata HOM05D003556 ORTHO05D003404 3.9e-14 82.4 150 32.0
C06p16220 Brassica napus HOM05D003556 ORTHO05D003404 3.9e-14 82.4 150 32.0
BolC6t36819H Brassica oleracea HOM05D003556 ORTHO05D003404 3.9e-14 82.4 150 32.0
Sp6g02140 Schrenkiella parvula HOM05D003556 ORTHO05D003404 3.9e-14 82.4 171 31.0
Sed0000124 Sechium edule HOM05D003556 ORTHO05D003404 3.9e-14 82.4 178 30.3
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 5.1e-14 82.0 153 34.6
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 6.7e-14 81.6 150 36.7
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 8.8e-14 81.3 171 31.0
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 180 29.4
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 171 31.0
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 180 29.4
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 171 31.0
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 8.8e-14 81.3 180 29.4
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 8.8e-14 81.3 171 31.0
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 8.8e-14 81.3 180 29.4
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 8.8e-14 81.3 171 31.0
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 8.8e-14 81.3 152 30.3
CARHR045450 Cardamine hirsuta HOM05D003556 ORTHO05D003404 1.1e-13 80.9 149 30.2
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 1.1e-13 80.9 156 32.7
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 1.5e-13 80.5 148 33.8
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 2.0e-13 80.1 171 29.8
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 2.0e-13 80.1 179 29.6
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 2.0e-13 80.1 171 29.8
Carub.0001s4433 Capsella rubella HOM05D003556 ORTHO05D003404 2.0e-13 80.1 150 30.0
Sp1g41350 Schrenkiella parvula HOM05D003556 ORTHO05D003404 2.0e-13 80.1 149 30.9
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 2.6e-13 79.7 171 29.8
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 2.6e-13 79.7 171 29.8
BraA05t20629Z Brassica rapa HOM05D003556 ORTHO05D003404 2.6e-13 79.7 150 31.3
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 3.3e-13 79.3 171 29.8
A05p17320 Brassica napus HOM05D003556 ORTHO05D003404 3.3e-13 79.3 150 31.3
A08p00310 Brassica napus HOM05D003556 ORTHO05D003404 3.3e-13 79.3 154 32.5
BraA08t32089Z Brassica rapa HOM05D003556 ORTHO05D003404 3.3e-13 79.3 154 32.5
CANSAT25G0193 Cannabis sativa HOM05D003556 ORTHO05D003404 3.3e-13 79.3 149 33.6
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 3.3e-13 79.3 152 30.3
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 3.3e-13 79.3 144 34.0
AL6G50890 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 5.7e-13 78.6 170 29.4
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 5.7e-13 78.6 178 28.1
C03p93200 Brassica napus HOM05D003556 ORTHO05D003404 5.7e-13 78.6 150 30.7
BolC3t21618H Brassica oleracea HOM05D003556 ORTHO05D003404 5.7e-13 78.6 150 30.7
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 5.7e-13 78.6 178 28.1
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 9.7e-13 77.8 173 28.9
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 1.3e-12 77.4 174 29.9
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 1.3e-12 77.4 156 32.7
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 1.3e-12 77.4 147 30.6
Cfa005889 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.7e-12 77.0 149 32.2
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 2.2e-12 76.6 155 35.5
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 2.2e-12 76.6 174 27.0
AT1G55770 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 3.7e-12 75.9 173 28.9
BcaB07g33190 Brassica carinata HOM05D003556 ORTHO05D003404 3.7e-12 75.9 161 31.1
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 3.7e-12 75.9 181 30.4
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 3.7e-12 75.9 172 27.9
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 4.8e-12 75.5 178 30.3
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 4.8e-12 75.5 147 31.3
Aa31LG10G420 Aethionema arabicum HOM05D003556 ORTHO05D003404 6.3e-12 75.1 145 29.7
Dinv33067 Davidia involucrata HOM05D003556 ORTHO05D003404 6.3e-12 75.1 145 34.5
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 6.3e-12 75.1 174 30.5
BcaB02g10800 Brassica carinata HOM05D003556 ORTHO05D003404 8.2e-12 74.7 175 30.3
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 1.1e-11 74.3 178 28.1
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 2.4e-11 73.2 184 28.3
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 5.3e-11 72.0 144 29.9
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 7.0e-11 71.6 151 29.1
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 1.6e-10 70.5 158 30.4
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 2.0e-10 70.1 149 29.5
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 2.0e-10 70.1 174 28.2
Gohir.A08G042100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 2.6e-10 69.7 144 29.9
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 7.7e-10 68.2 144 29.2
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 1.0e-09 67.8 172 27.9
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 1.0e-09 67.8 174 28.7
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 1.0e-09 67.8 180 28.3
Gorai.004G052000 Gossypium raimondii HOM05D003556 ORTHO05D003404 1.3e-09 67.4 138 29.0
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 1.3e-09 67.4 153 29.4
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.7e-09 67.0 157 29.9
AT4G02250 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 2.2e-09 66.6 134 30.6
Sed0028173 Sechium edule HOM05D003556 ORTHO05D003404 2.2e-09 66.6 173 28.3
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 2.2e-09 66.6 169 26.0
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 3.8e-09 65.9 177 32.2
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 3.8e-09 65.9 172 26.7
AUR62008689 Chenopodium quinoa HOM05D003556 ORTHO05D003404 1.9e-08 63.5 144 28.5
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 2.5e-08 63.2 153 31.4
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 3.2e-08 62.8 131 29.0
AUR62025555 Chenopodium quinoa HOM05D003556 ORTHO05D003404 4.2e-08 62.4 144 27.8
DCAR_002850 Daucus carota HOM05D003556 ORTHO05D003404 1.6e-07 60.5 181 26.5
EL10Ac7g18176 Beta vulgaris HOM05D003556 ORTHO05D003404 2.7e-07 59.7 144 25.7
PSO081G0137 Papaver somniferum HOM05D001445 ORTHO05D001261 2.7e-07 59.7 177 30.5
Eucgr.K03504 Eucalyptus grandis HOM05D003556 ORTHO05D003404 1.0e-06 57.8 157 29.9
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 1.4e-06 57.4 149 28.9
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 8.8e-06 54.7 152 28.3


User provided reference genes

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