Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 3.4e-93 345.1 194 100.0
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.9e-91 339.3 194 97.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 6.7e-89 330.9 194 86.1
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.1e-86 323.6 194 85.6
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.5e-85 319.7 194 82.5
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.5e-85 319.7 194 83.5
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 82.0
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 5.9e-85 317.8 194 82.0
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 5.9e-85 317.8 194 82.0
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 7.7e-85 317.4 194 79.4
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 8.5e-84 313.9 194 80.9
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 80.9
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 80.9
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 82.0
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.9e-83 312.8 198 80.3
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 3.2e-83 312.0 194 82.5
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 5.5e-83 311.2 193 80.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.2e-82 310.1 194 78.4
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 81.4
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.7e-82 308.1 195 80.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 6.1e-82 307.8 194 79.9
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 6.1e-82 307.8 194 79.4
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 7.9e-82 307.4 194 81.4
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.4e-81 306.6 194 80.4
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.8e-81 306.2 194 79.4
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.8e-81 306.2 198 78.8
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.9e-81 305.1 194 78.4
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 5.1e-81 304.7 194 79.9
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 8.8e-81 303.9 194 78.4
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 8.8e-81 303.9 194 78.4
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.8e-81 303.9 196 80.1
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 78.9
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.0e-80 302.8 198 77.3
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.6e-80 302.4 194 78.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 5.7e-80 301.2 197 76.6
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.4e-80 300.8 194 78.9
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 9.7e-80 300.4 194 76.8
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 9.7e-80 300.4 197 77.7
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 9.7e-80 300.4 201 75.1
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 9.7e-80 300.4 199 75.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.7e-80 300.4 201 74.6
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-79 299.7 195 75.9
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.7e-79 299.7 194 78.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.7e-79 299.7 198 77.3
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.8e-79 298.9 200 74.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.8e-79 298.9 200 74.0
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 6.3e-79 297.7 194 74.7
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 8.2e-79 297.4 200 74.5
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 8.2e-79 297.4 194 75.8
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.4e-78 295.8 194 76.8
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.1e-78 295.4 201 74.1
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 4.1e-78 295.0 194 75.3
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 7.0e-78 294.3 194 76.8
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 9.1e-78 293.9 199 72.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 9.1e-78 293.9 193 76.2
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.1e-78 293.9 201 72.1
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.2e-77 293.5 194 76.3
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.6e-77 293.1 199 73.9
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.6e-77 293.1 194 75.8
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.6e-77 292.4 194 74.2
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.5e-77 292.0 200 78.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.5e-77 292.0 203 71.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.5e-77 291.6 194 74.7
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.5e-77 291.6 196 73.5
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.9e-77 291.2 198 72.7
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.9e-77 291.2 194 74.7
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 7.7e-77 290.8 199 73.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 7.7e-77 290.8 199 73.4
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 7.7e-77 290.8 199 73.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 7.7e-77 290.8 199 73.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-76 290.4 195 76.4
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-76 290.4 194 75.8
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 194 74.7
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.7e-76 289.7 194 75.3
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.7e-76 289.7 194 75.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.7e-76 289.7 192 74.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.7e-76 289.7 194 73.7
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 3.8e-76 288.5 198 73.2
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.8e-76 288.5 194 74.7
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.8e-76 288.5 198 79.8
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 3.8e-76 288.5 199 72.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.8e-76 288.5 194 74.2
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.8e-76 288.5 198 75.3
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 5.0e-76 288.1 194 74.2
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.0e-76 288.1 196 75.0
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 8.5e-76 287.3 197 73.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 8.5e-76 287.3 197 73.1
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.1e-75 287.0 196 73.5
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.5e-75 286.6 199 75.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.5e-75 286.6 196 71.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.5e-75 285.8 196 73.0
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.5e-75 285.8 201 71.1
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.2e-75 285.0 204 70.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 5.5e-75 284.6 194 75.3
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.5e-75 284.6 217 68.7
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.2e-74 283.5 198 72.2
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.6e-74 283.1 199 71.4
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.1e-74 282.7 194 75.8
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.7e-74 282.3 201 69.7
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.7e-74 282.3 202 72.3
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 3.6e-74 282.0 199 71.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.6e-74 282.0 199 71.4
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 6.1e-74 281.2 194 73.2
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.0e-74 280.8 206 70.9
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.0e-73 280.4 199 70.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.8e-73 279.6 210 68.1
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 3.0e-73 278.9 198 73.7
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 5.2e-73 278.1 194 71.1
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 8.8e-73 277.3 186 75.3
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.1e-72 276.9 243 62.1
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.5e-72 276.6 198 71.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.6e-72 275.8 199 73.4
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 4.4e-72 275.0 199 68.3
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 4.4e-72 275.0 199 68.3
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 5.7e-72 274.6 193 67.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 7.5e-72 274.2 194 73.7
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 9.7e-72 273.9 202 69.3
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.8e-70 269.6 175 77.7
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.8e-70 269.6 192 68.8
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 7.0e-70 267.7 180 75.6
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 7.0e-70 267.7 192 66.7
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 7.0e-70 267.7 211 66.8
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.2e-69 266.9 223 64.1
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.6e-69 266.5 176 77.3
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.9e-69 264.6 182 72.0
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.1e-67 260.4 189 70.4
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.2e-67 258.8 233 61.4
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 7.2e-67 257.7 180 73.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 7.2e-67 257.7 185 67.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 9.4e-67 257.3 215 65.1
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.2e-66 256.9 201 73.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 3.6e-66 255.4 202 65.8
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.4e-65 253.4 175 73.1
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.4e-65 253.4 187 65.2
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 6.8e-65 251.1 194 69.1
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 2.8e-63 245.7 187 66.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 4.1e-62 241.9 194 74.7
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 5.4e-62 241.5 198 60.1
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 5.4e-62 241.5 213 61.0
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 5.9e-61 238.0 182 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 2.9e-60 235.7 178 66.3
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 7.0e-54 214.5 177 65.5
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 7.7e-53 211.1 201 57.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.9e-51 206.5 117 89.7
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.4e-49 200.3 116 85.3
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 3.0e-49 199.1 153 66.0
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 9.5e-43 177.6 98 90.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.6e-42 176.8 99 91.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.3e-39 167.2 99 86.9
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 8.3e-39 164.5 177 53.7
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 6.2e-34 148.3 189 52.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.9e-30 136.7 197 45.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 3.2e-30 136.0 97 74.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.2e-30 136.0 70 97.1
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.6e-29 133.7 97 64.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.0e-28 129.4 98 69.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.6e-26 123.6 194 50.0
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.3e-23 114.0 56 87.5
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 6.4e-23 111.7 100 66.0
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.2e-22 109.4 56 78.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 3.0e-20 102.8 203 39.9
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.0e-20 102.8 110 50.9
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.6e-18 95.9 203 38.9
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 3.8e-15 85.9 72 61.1
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.4e-14 83.2 51 82.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.2e-14 82.4 53 79.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 6.0e-13 78.6 56 62.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 3.0e-12 76.3 167 31.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 6.6e-12 75.1 41 73.2
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.6e-11 72.0 39 76.9
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.1e-09 66.2 72 52.8
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 5.3e-09 65.5 35 77.1
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 7.1e-06 55.1 57 56.1


User provided reference genes

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