Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.7e-302 1041.2 518 100.0
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.2e-257 892.9 524 86.8
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 3.9e-245 851.3 531 81.4
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.8e-242 842.4 534 80.5
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.5e-239 832.0 519 80.5
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.1e-234 816.6 540 78.1
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 3.1e-234 815.1 524 77.5
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.2e-225 786.6 527 74.6
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 3.5e-225 785.0 518 75.1
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.0e-224 783.5 517 74.9
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.3e-224 783.1 517 74.9
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 1.2e-222 776.5 520 74.8
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 7.5e-220 767.3 540 72.4
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 8.3e-219 763.8 525 73.3
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 1.6e-217 759.6 530 71.7
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.7e-216 756.1 519 72.3
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.1e-215 753.4 519 71.5
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 1.5e-215 753.1 540 71.1
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 4.3e-215 751.5 550 69.8
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.2e-214 750.0 480 77.3
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.2e-214 750.0 524 73.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.0e-213 746.9 540 71.7
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.8e-213 746.1 525 72.2
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 2.9e-211 738.8 518 72.4
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.0e-209 732.6 537 69.1
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 4.6e-209 731.5 430 80.0
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 3.3e-207 725.3 552 68.7
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 9.5e-207 723.8 543 66.9
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 3.1e-205 718.8 533 69.4
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 5.2e-205 718.0 514 70.0
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 5.2e-205 718.0 517 68.7
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 6.8e-205 717.6 519 69.4
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 1.2e-204 716.8 423 79.0
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 2.6e-204 715.7 524 69.3
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 2.6e-204 715.7 524 69.3
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.1e-202 710.3 452 75.2
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.4e-202 709.9 524 68.9
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 1.9e-202 709.5 509 69.9
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.4e-202 709.1 495 71.3
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 4.1e-202 708.4 544 68.0
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 7.0e-202 707.6 529 68.1
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.6e-201 706.4 528 68.4
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.7e-201 705.7 512 70.1
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 3.5e-201 705.3 524 68.5
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.6e-201 704.9 521 69.1
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 7.8e-201 704.1 483 71.0
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.3e-200 703.4 523 69.0
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 6.6e-200 701.0 471 70.1
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 8.6e-200 700.7 538 68.4
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 5.6e-199 698.0 429 76.7
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.2e-198 696.8 519 69.0
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.8e-198 695.7 527 68.3
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 4.7e-198 694.9 471 72.8
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 6.2e-198 694.5 500 69.6
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 6.2e-198 694.5 500 69.6
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 1.8e-197 693.0 528 67.0
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 4.0e-197 691.8 521 67.2
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 5.2e-197 691.4 535 66.5
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 6.8e-197 691.0 529 66.5
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 8.9e-197 690.6 500 69.6
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 8.9e-197 690.6 500 69.6
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.5e-196 689.9 527 67.2
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 5.8e-196 688.0 523 68.1
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.7e-195 686.4 521 66.6
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.9e-195 685.6 514 67.3
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 6.4e-195 684.5 503 70.4
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 8.3e-195 684.1 421 76.0
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.1e-194 683.7 530 66.4
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.9e-194 682.9 518 66.6
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.9e-194 682.9 518 66.6
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 4.1e-194 681.8 468 71.8
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 5.4e-194 681.4 522 66.9
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 5.4e-194 681.4 525 65.1
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 7.1e-194 681.0 518 66.4
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 2.1e-193 679.5 508 68.1
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 2.7e-193 679.1 528 66.7
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 2.3e-192 676.0 577 62.0
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 2.3e-192 676.0 521 66.0
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 2.3e-192 676.0 521 66.0
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 5.1e-192 674.9 532 66.0
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 6.6e-192 674.5 519 64.4
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 6.6e-192 674.5 469 71.6
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.5e-191 672.5 515 66.4
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.5e-191 672.5 372 92.2
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-190 670.2 518 67.4
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.1e-190 669.5 518 67.0
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.1e-190 669.5 452 70.6
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.6e-190 668.7 443 71.1
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 4.7e-190 668.3 524 62.6
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.7e-190 668.3 518 67.0
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.4e-189 666.8 499 70.3
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.3e-189 666.0 458 77.5
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 3.1e-189 665.6 507 65.3
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 6.8e-189 664.5 422 74.2
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.5e-188 663.3 479 67.6
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.0e-188 662.9 530 66.0
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 4.4e-188 661.8 479 67.6
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 5.8e-188 661.4 488 67.0
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-187 660.2 519 67.6
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.2e-186 654.1 588 59.5
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.3e-184 650.2 418 73.7
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.3e-184 649.4 592 59.8
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.9e-184 648.7 507 63.9
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.8e-181 639.8 447 71.6
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 3.1e-181 639.0 642 55.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 5.4e-178 628.2 503 65.0
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.6e-177 625.2 420 69.5
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.9e-175 619.8 494 65.6
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 2.5e-175 619.4 535 62.2
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.1e-174 616.3 448 68.1
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.1e-174 616.3 536 62.3
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.6e-172 609.4 419 66.6
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 3.8e-171 605.5 500 62.4
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 4.9e-171 605.1 503 58.3
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.3e-168 597.0 520 61.5
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.5e-167 593.6 531 60.6
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 6.2e-166 588.2 461 66.2
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 1.1e-165 587.4 362 79.6
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.1e-165 585.9 422 63.7
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 4.0e-165 585.5 370 71.9
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 4.5e-164 582.0 479 62.8
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 5.8e-164 581.6 457 61.3
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.2e-161 573.9 526 56.7
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.2e-161 573.9 417 65.5
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.5e-161 572.4 564 56.7
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 4.6e-161 572.0 458 64.8
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.9e-160 568.9 401 72.8
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.6e-158 563.5 631 52.9
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 5.3e-157 558.5 465 64.1
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 6.9e-157 558.1 529 57.5
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.2e-154 549.3 440 62.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 3.5e-153 545.8 546 56.2
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 6.0e-153 545.0 481 57.6
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 5.3e-149 531.9 368 70.1
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.0e-144 516.2 462 60.6
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 2.6e-140 503.1 416 64.4
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.5e-140 502.3 461 56.8
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 2.2e-139 500.0 354 66.4
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.9e-138 496.9 534 54.3
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 7.2e-138 495.0 381 65.6
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.7e-137 493.0 448 58.9
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.7e-136 488.4 443 56.9
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.0e-135 486.9 424 61.8
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.3e-135 486.1 365 67.9
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.9e-132 475.3 393 63.1
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.1e-125 452.6 336 63.1
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 9.7e-119 431.4 389 57.8
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.6e-113 414.1 280 72.1
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.2e-100 371.3 210 81.4
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.3e-99 367.9 434 45.4
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 6.0e-76 289.3 306 55.2
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.7e-75 287.7 149 87.9
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.6e-73 280.0 265 61.1
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.8e-72 277.7 304 52.6
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 8.7e-67 258.8 235 59.1
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.4e-64 251.5 193 59.6
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.4e-64 250.8 155 76.1
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.8e-63 246.1 445 38.9
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 8.4e-62 242.3 406 34.5
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.1e-61 241.9 160 64.4
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 9.9e-55 218.8 466 32.8
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.6e-49 201.4 239 53.1
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 6.0e-44 183.0 102 81.4
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 5.5e-21 106.7 51 96.1
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.2e-20 105.5 177 33.9
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 7.9e-20 102.8 51 92.2
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.8e-19 101.7 291 27.1
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 7.4e-18 96.3 49 83.7
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 4.1e-16 90.5 122 48.4
Lalb_Chr11g0074511 Lupinus albus HOM05D004042 ORTHO05D004552 1.2e-15 89.0 121 52.9
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 2.1e-12 78.2 106 45.3
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 2.1e-12 78.2 63 50.8
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.4e-10 70.5 39 82.1
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.6e-07 62.0 42 69.0
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.0e-06 59.3 40 70.0


User provided reference genes

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