Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 5.0e-199 697.6 352 100.0
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 2.0e-187 659.1 352 94.0
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 1.5e-171 606.3 352 87.2
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 2.4e-169 599.0 350 86.9
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 3.2e-166 588.6 351 84.3
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 2.1e-165 585.9 351 84.6
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 8.0e-165 583.9 347 85.0
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 8.8e-164 580.5 349 84.5
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 1.7e-162 576.2 349 82.8
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 2.0e-160 569.3 344 82.6
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 2.0e-160 569.3 364 79.4
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 3.5e-160 568.5 344 82.3
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 3.5e-160 568.5 355 80.6
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.7e-159 566.2 343 81.3
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.7e-157 558.9 364 78.8
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.8e-156 556.2 360 78.6
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 8.8e-156 553.9 348 80.5
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 2.4e-153 545.8 336 79.5
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 2.0e-152 542.7 361 76.2
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.3e-151 539.3 352 76.7
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.9e-151 538.9 352 76.1
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 1.5e-150 536.6 367 74.4
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.5e-150 536.6 363 75.8
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 1.5e-150 536.6 346 76.9
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.5e-150 535.8 363 75.8
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 7.2e-150 534.3 360 74.2
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 7.2e-150 534.3 344 77.0
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 7.2e-150 534.3 363 75.5
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.6e-149 533.1 356 75.8
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 3.6e-149 531.9 367 74.1
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 4.7e-149 531.6 356 74.4
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 1.0e-148 530.4 349 74.8
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 4.0e-148 528.5 347 75.2
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 5.2e-148 528.1 372 72.0
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 5.2e-148 528.1 311 82.0
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 5.2e-148 528.1 363 73.8
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 5.2e-148 528.1 355 73.8
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 6.8e-148 527.7 326 78.8
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 1.5e-147 526.6 358 74.6
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.0e-147 526.2 330 77.9
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 2.0e-147 526.2 353 73.4
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.0e-147 526.2 360 72.8
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.6e-147 525.8 360 73.1
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.6e-147 525.8 353 73.1
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 2.6e-147 525.8 353 73.4
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 3.4e-147 525.4 361 73.7
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 7.5e-147 524.2 336 76.5
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 7.5e-147 524.2 303 81.8
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 7.5e-147 524.2 354 74.3
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 9.8e-147 523.9 343 76.4
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 9.8e-147 523.9 357 73.9
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 9.8e-147 523.9 303 82.5
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 9.8e-147 523.9 305 81.6
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 9.8e-147 523.9 306 82.7
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 9.8e-147 523.9 347 76.9
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.3e-146 523.5 343 76.4
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 1.3e-146 523.5 359 74.1
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 1.7e-146 523.1 353 74.8
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 3.7e-146 521.9 303 81.2
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.9e-146 521.5 333 77.2
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 4.9e-146 521.5 363 71.9
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.4e-145 520.0 321 78.2
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.4e-145 520.0 343 76.1
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 1.4e-145 520.0 352 73.0
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.8e-145 519.6 343 75.8
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 3.2e-145 518.8 353 73.7
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 3.2e-145 518.8 363 71.1
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 9.2e-145 517.3 320 77.2
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.6e-144 516.5 355 72.4
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-144 516.5 361 72.0
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 1.6e-144 516.5 346 71.7
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 2.7e-144 515.8 360 73.1
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.7e-144 515.8 310 80.0
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 2.7e-144 515.8 310 80.3
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 2.7e-144 515.8 345 73.3
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 4.6e-144 515.0 333 76.6
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.6e-144 515.0 333 76.6
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 5.9e-144 514.6 356 75.3
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 7.8e-144 514.2 328 77.1
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 7.8e-144 514.2 333 76.6
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.0e-143 513.8 364 73.1
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.0e-143 513.8 311 79.7
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 1.0e-143 513.8 343 74.3
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.3e-143 513.5 370 71.6
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.3e-143 513.5 370 71.6
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.3e-143 513.5 379 69.7
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 1.7e-143 513.1 364 71.7
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 1.7e-143 513.1 364 71.7
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 2.3e-143 512.7 372 71.5
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 2.9e-143 512.3 365 72.3
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 2.9e-143 512.3 305 80.0
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.9e-143 512.3 355 73.0
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 3.9e-143 511.9 343 74.9
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 3.9e-143 511.9 303 81.2
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 3.9e-143 511.9 355 72.7
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 5.0e-143 511.5 349 73.4
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.0e-143 511.5 333 76.0
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 5.0e-143 511.5 370 71.9
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 8.6e-143 510.8 324 76.9
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 1.1e-142 510.4 366 71.6
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.1e-142 510.4 368 71.5
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 1.9e-142 509.6 310 78.7
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 2.5e-142 509.2 361 70.4
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 2.5e-142 509.2 326 76.7
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 3.3e-142 508.8 367 70.6
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 3.3e-142 508.8 363 71.3
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 9.5e-142 507.3 365 71.8
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 9.5e-142 507.3 365 71.8
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 1.2e-141 506.9 332 75.3
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 2.1e-141 506.1 299 81.6
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 2.1e-141 506.1 365 71.2
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 3.6e-141 505.4 332 77.1
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 4.7e-141 505.0 337 74.2
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 8.0e-141 504.2 297 80.8
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.5e-139 500.0 312 79.8
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.0e-139 499.6 366 68.9
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 3.4e-139 498.8 354 71.5
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.4e-139 498.4 310 77.1
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 3.0e-135 485.7 302 76.2
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 7.3e-134 481.1 448 58.0
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 7.3e-134 481.1 356 69.4
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.1e-133 479.6 321 72.3
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 1.5e-131 473.4 343 70.8
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 6.6e-127 458.0 271 80.8
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 1.1e-126 457.2 305 73.8
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.3e-126 455.3 300 77.7
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 5.6e-126 454.9 408 62.3
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.6e-125 453.4 364 64.8
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 8.1e-125 451.1 276 77.5
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.1e-124 450.7 309 68.3
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 4.0e-124 448.7 382 63.1
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 3.7e-122 442.2 361 64.8
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 8.4e-122 441.0 309 73.1
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 1.1e-121 440.7 317 72.6
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.2e-120 437.2 311 65.0
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.0e-119 434.1 349 65.6
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 5.1e-119 431.8 352 59.1
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 5.1e-119 431.8 275 76.7
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 6.8e-116 421.4 251 80.1
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.2e-115 420.6 310 61.9
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 2.0e-115 419.9 309 62.8
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 9.3e-113 411.0 357 62.5
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 5.6e-110 401.7 345 60.3
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.6e-109 400.2 310 61.6
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.4e-107 392.5 310 61.6
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 1.2e-104 384.0 221 84.6
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 3.5e-104 382.5 337 57.9
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.3e-101 374.0 301 64.5
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 7.6e-99 364.8 230 77.4
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 1.0e-90 337.8 300 55.3
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 2.4e-84 316.6 221 65.6
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 3.3e-78 296.2 241 66.0
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 2.6e-62 243.4 150 76.7
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 2.2e-61 240.4 339 45.1
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 5.7e-54 215.7 171 60.8
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 4.5e-51 206.1 169 65.7
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 8.3e-45 185.3 186 56.5
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 6.8e-31 139.0 95 71.6
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 6.4e-29 132.5 280 32.9
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 3.0e-26 123.6 97 64.9
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 8.0e-24 115.5 335 28.4
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 1.0e-23 115.2 65 83.1
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 1.4e-23 114.8 326 28.8
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.4e-20 104.8 377 26.5
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.4e-20 104.8 240 35.0
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 4.7e-16 89.7 56 80.4
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 6.2e-16 89.4 67 65.7
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 6.2e-16 89.4 67 65.7
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 8.1e-16 89.0 59 72.9
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 1.4e-15 88.2 67 65.7
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.2e-11 75.1 124 36.3
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 3.5e-11 73.6 90 46.7
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 1.1e-09 68.6 39 79.5
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 3.3e-09 67.0 86 46.5
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 2.3e-07 60.8 39 74.4
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 2.3e-07 60.8 39 74.4
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 4.0e-07 60.1 39 71.8
HanXRQChr05g0141861 Helianthus annuus HOM05D000001 ORTHO05D009862 4.4e-06 56.6 50 60.0
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 7.6e-06 55.8 47 59.6


User provided reference genes

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