Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1770.0 867 100.0
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1651.0 869 92.6
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1574.3 872 88.3
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1503.8 874 83.3
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1495.3 876 82.5
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1487.2 874 83.2
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1468.4 868 83.1
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1463.4 871 81.9
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1444.9 874 80.1
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1396.3 866 79.1
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1389.4 864 78.8
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1317.0 860 73.6
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1306.6 875 72.1
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1299.3 863 71.6
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1298.9 864 72.0
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 870 71.4
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1297.7 862 73.4
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1296.2 870 71.3
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1295.0 870 71.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1292.7 869 71.6
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1292.3 870 71.5
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1290.0 870 71.0
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1289.6 867 71.2
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 873 71.6
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1281.5 867 71.0
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1279.6 878 69.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 867 71.6
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1276.9 874 71.1
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1275.8 869 71.0
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1271.9 862 71.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 866 70.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1268.4 857 71.3
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1268.4 866 69.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1265.8 866 69.5
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 865 71.6
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1262.3 873 70.1
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1260.4 858 70.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1258.8 858 70.3
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1258.8 861 70.3
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1252.7 861 69.9
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1250.7 864 69.9
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1250.7 867 69.4
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 859 70.1
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1249.2 878 68.7
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 864 69.8
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1246.1 868 69.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 883 68.3
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1234.9 866 68.9
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1233.4 865 67.5
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1233.4 860 68.6
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 870 68.6
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 872 67.7
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 878 67.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 877 66.8
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1219.5 865 67.9
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 883 66.4
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 859 67.8
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 869 67.0
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1210.3 860 67.8
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1209.5 875 66.5
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1209.5 865 66.7
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 874 65.7
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 863 67.6
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 861 67.4
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1206.4 871 66.5
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1205.3 867 66.6
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1204.1 871 66.4
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1203.0 861 67.2
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1202.6 865 66.0
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 864 67.0
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1200.3 857 66.4
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1199.9 863 67.0
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1199.9 861 67.2
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1199.5 865 66.5
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1199.5 865 66.6
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1199.5 863 66.9
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 865 66.5
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1197.2 864 65.7
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1195.6 865 66.4
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1195.3 868 66.7
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 868 67.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1192.2 866 66.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1190.3 861 66.4
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1189.9 861 66.6
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1185.2 858 66.8
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 858 65.9
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1163.7 861 66.4
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1142.9 876 63.8
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1137.5 824 67.5
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1117.4 852 63.7
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1098.6 754 71.9
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1079.3 856 61.2
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 7.9e-307 1057.0 691 72.4
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.9e-300 1035.8 857 60.0
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.2e-299 1033.1 865 60.9
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 7.0e-295 1017.3 647 74.3
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 2.9e-293 1011.9 860 56.3
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.8e-288 995.3 867 55.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.4e-287 993.0 862 56.3
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 3.2e-284 981.9 692 67.3
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 4.2e-276 954.9 862 53.1
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 6.9e-202 708.4 749 47.3
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.7e-164 582.4 388 71.4
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 7.5e-156 555.4 483 59.0
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.6e-145 521.2 425 58.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.9e-119 434.5 358 61.2
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 1.5e-84 318.5 307 55.0
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.2e-68 265.8 168 75.0
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 7.2e-66 256.5 204 61.3
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.8e-61 241.9 175 72.0
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.6e-44 185.7 196 52.0
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.5e-42 178.3 169 53.8
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.3e-34 151.4 216 42.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.5e-31 142.5 148 46.6
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.3e-26 123.6 120 52.5
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-25 122.9 84 69.0
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 6.8e-24 117.1 87 69.0
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 6.8e-24 117.1 71 77.5
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.1e-21 109.8 81 65.4
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 5.4e-21 107.5 90 61.1
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 5.0e-19 100.9 111 48.6
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.2e-13 81.6 296 24.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 4.1e-13 81.3 289 24.6
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.7e-11 75.9 321 23.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.9e-11 74.7 329 22.8
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 5.1e-11 74.3 328 23.2
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.6e-10 70.9 309 24.9
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 7.3e-10 70.5 267 25.1
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 9.5e-10 70.1 319 24.1
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.2e-09 69.7 64 50.0
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 2.1e-09 68.9 239 25.5
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 8.1e-09 67.0 323 26.3
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.0e-08 64.7 221 26.2
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.9e-08 63.5 32 81.2
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.5e-07 62.8 307 25.4
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 7.6e-07 60.5 94 39.4
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.2e-06 58.9 174 24.7
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 3.8e-06 58.2 177 27.7
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.4e-06 57.0 214 24.3


User provided reference genes

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