Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 7.8e-192 673.7 358 100.0
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.3e-178 629.8 358 94.4
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 1.3e-175 619.8 358 92.2
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 9.9e-171 603.6 358 91.3
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 2.0e-163 579.3 358 85.5
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 4.5e-163 578.2 359 87.2
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 3.1e-156 555.4 358 84.4
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 3.3e-150 535.4 358 81.6
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 4.0e-148 528.5 356 78.1
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 7.1e-145 517.7 355 77.2
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 6.0e-144 514.6 353 78.2
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.3e-143 513.5 341 79.2
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 3.9e-143 511.9 357 76.5
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 6.9e-140 501.1 359 74.7
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 2.6e-139 499.2 356 74.7
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 5.9e-139 498.0 340 77.1
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 6.5e-138 494.6 357 74.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 3.2e-137 492.3 355 73.8
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.2e-137 491.1 352 75.3
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 1.8e-135 486.5 341 76.5
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 3.3e-134 482.3 341 76.0
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 8.2e-133 477.6 346 73.7
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.4e-132 476.9 345 75.1
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.4e-132 476.9 345 73.0
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 2.4e-132 476.1 354 72.3
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 7.7e-131 471.1 348 73.3
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.7e-130 469.9 356 70.5
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 2.2e-130 469.5 351 72.4
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 8.5e-130 467.6 349 70.2
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 1.1e-129 467.2 349 69.9
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.9e-129 466.5 341 76.2
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.9e-129 466.5 355 69.0
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 1.9e-129 466.5 355 71.3
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 4.2e-129 465.3 352 72.4
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 7.2e-129 464.5 434 61.1
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.2e-128 463.8 342 72.8
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 1.6e-128 463.4 321 74.5
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 3.6e-128 462.2 354 71.2
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 3.6e-128 462.2 341 69.5
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 3.6e-128 462.2 341 69.8
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 6.1e-128 461.5 353 72.2
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 1.8e-127 459.9 331 73.7
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.3e-127 459.5 353 71.7
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 8.8e-127 457.6 357 71.7
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.1e-126 457.2 383 65.5
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 2.0e-126 456.4 347 70.6
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 4.4e-126 455.3 394 66.5
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 9.7e-126 454.1 340 70.6
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.7e-125 453.4 331 72.5
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 2.2e-125 453.0 359 69.1
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 2.8e-125 452.6 336 71.4
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.7e-125 452.2 329 74.2
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 1.1e-124 450.7 331 72.5
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.4e-124 450.3 351 69.5
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.4e-124 450.3 359 68.5
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 3.1e-124 449.1 325 73.2
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 3.1e-124 449.1 325 73.2
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 3.1e-124 449.1 354 69.2
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 3.1e-124 449.1 354 69.8
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 4.5e-123 445.3 355 67.3
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 7.7e-123 444.5 341 70.4
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.3e-122 443.7 348 67.5
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 5.0e-122 441.8 344 69.5
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.9e-121 439.9 354 68.4
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 3.2e-121 439.1 247 89.9
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 4.2e-121 438.7 364 67.6
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 4.2e-121 438.7 359 67.4
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 9.4e-121 437.6 326 72.1
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.7e-120 436.0 341 70.7
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 3.6e-120 435.6 297 78.8
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 6.1e-120 434.9 340 69.1
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 6.1e-120 434.9 278 85.6
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.0e-119 434.1 337 70.9
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.4e-119 433.7 345 69.6
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.4e-119 433.7 341 70.4
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.4e-119 433.7 350 68.9
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.3e-119 433.0 326 71.2
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 2.3e-119 433.0 329 70.5
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.9e-119 432.2 326 71.5
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 5.2e-119 431.8 326 70.9
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 6.7e-119 431.4 353 68.3
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 6.7e-119 431.4 336 68.2
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 4.4e-118 428.7 318 72.3
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 4.4e-118 428.7 293 77.5
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 9.7e-118 427.6 342 65.8
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 3.7e-117 425.6 333 66.4
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 2.0e-115 419.9 347 67.1
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.6e-115 419.5 298 75.5
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.2e-114 416.4 335 66.3
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 4.2e-113 412.1 352 65.9
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.2e-112 410.6 313 71.9
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.7e-112 408.7 341 65.7
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.7e-109 400.2 283 73.9
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 2.4e-108 396.4 390 62.1
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 3.5e-107 392.5 409 58.2
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.9e-106 389.4 292 72.3
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.2e-104 384.0 291 72.2
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 4.7e-104 382.1 293 72.4
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 2.6e-102 376.3 334 63.2
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 5.7e-102 375.2 321 63.9
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 8.3e-101 371.3 285 71.9
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 8.3e-101 371.3 341 60.4
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.8e-100 370.2 352 60.5
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 9.5e-97 357.8 396 57.6
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 8.9e-95 351.3 442 49.8
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.5e-94 348.2 395 52.4
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 8.3e-93 344.7 335 58.2
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.2e-91 340.9 250 76.8
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.6e-91 340.5 345 56.2
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.3e-90 337.4 204 86.8
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.7e-90 337.0 223 80.3
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.1e-89 334.3 235 75.7
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.5e-89 334.0 404 52.0
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 1.3e-85 320.9 262 69.5
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.2e-83 314.3 229 71.2
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.2e-83 314.3 235 73.6
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 2.0e-83 313.5 236 72.5
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 5.0e-82 308.9 244 70.5
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 2.1e-72 276.9 303 54.1
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 6.2e-72 275.4 325 44.9
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 6.2e-72 275.4 277 58.8
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.1e-68 264.6 334 47.3
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 3.5e-67 259.6 178 78.7
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.4e-60 236.9 337 42.1
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 8.7e-58 228.4 149 87.2
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.2e-52 209.9 148 70.3
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 2.8e-48 196.8 171 69.6
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 1.2e-46 191.4 145 66.9
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 2.2e-45 187.2 196 54.6
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.9e-41 174.1 143 62.9
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 3.5e-35 153.3 357 33.6
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 3.0e-34 150.2 107 81.3
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.3e-32 144.8 94 81.9
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.4e-31 141.4 127 66.9
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.5e-28 130.6 99 68.7
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 6.3e-24 115.9 114 64.0
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 4.5e-22 109.8 166 42.8
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 3.8e-21 106.7 222 32.4
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 8.5e-21 105.5 88 63.6
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 1.1e-20 105.1 78 66.7
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 5.7e-17 92.8 57 78.9
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 3.1e-15 87.0 52 86.5
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 4.1e-15 86.7 98 53.1
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 9.1e-15 85.5 56 76.8
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 9.1e-15 85.5 53 83.0
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.7e-13 81.3 50 76.0
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 2.2e-13 80.9 59 74.6
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 1.1e-12 78.6 68 60.3
arahy.Tifrunner.gnm1.ann1.2X24PF Arachis hypogaea HOM05D002335 ORTHO05D006282 2.7e-11 73.9 58 63.8
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.8e-10 71.2 47 68.1
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 1.4e-07 61.6 74 51.4
arahy.Tifrunner.gnm1.ann1.TGKM3A Arachis hypogaea HOM05D002335 ORTHO05D006282 2.4e-07 60.8 45 66.7
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 2.4e-07 60.8 44 68.2


User provided reference genes

Program Settings