Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1533.1 754 100.0
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1457.6 754 94.6
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1394.0 754 90.7
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1387.1 754 89.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1284.6 753 83.3
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1280.4 754 83.2
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1278.8 755 83.8
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1241.9 760 81.4
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1234.2 759 81.6
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1179.9 763 78.8
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1116.7 757 74.1
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1116.3 756 73.4
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 756 73.3
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1106.7 753 72.2
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1106.7 765 72.4
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1100.9 758 73.5
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 756 72.8
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1095.9 757 72.5
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1094.0 763 73.3
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1092.0 758 73.2
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1091.6 756 71.3
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1088.2 758 72.8
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 756 72.1
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1087.4 758 72.6
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1081.6 755 71.4
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1080.1 780 69.5
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1077.4 756 71.8
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.8e-310 1068.9 757 72.4
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.0e-310 1068.1 779 68.4
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.5e-309 1065.8 754 71.0
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.3e-308 1062.8 757 73.2
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.3e-308 1062.8 757 73.3
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 3.1e-307 1058.1 779 68.4
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 9.0e-307 1056.6 758 71.0
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 1.2e-306 1056.2 780 68.8
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-306 1055.8 758 71.9
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.3e-305 1052.7 780 68.7
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.7e-305 1052.4 780 68.7
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.4e-304 1048.5 773 68.6
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.2e-303 1046.2 756 70.4
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.6e-303 1045.8 755 69.4
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.7e-303 1045.0 758 70.6
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 6.7e-302 1040.4 793 67.1
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 9.6e-301 1036.6 756 69.6
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 8.2e-300 1033.5 802 66.3
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 4.0e-299 1031.2 662 78.1
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.3e-297 1026.2 724 72.0
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.5e-296 1021.9 757 69.9
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.3e-294 1016.1 788 66.8
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 8.7e-294 1013.4 779 66.1
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 4.3e-293 1011.1 773 65.5
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 7.4e-293 1010.4 757 67.6
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.8e-292 1008.4 776 66.4
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.7e-292 1008.1 772 65.2
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.4e-291 1006.1 757 68.8
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 2.4e-291 1005.4 776 65.7
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.5e-290 1002.7 780 65.3
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.6e-290 1001.9 781 65.7
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 5.9e-290 1000.7 771 65.5
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 2.9e-289 998.4 777 64.7
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 3.8e-289 998.0 772 65.5
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.4e-288 996.1 774 64.5
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 3.2e-288 995.0 755 66.1
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 7.2e-288 993.8 755 66.4
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.7e-287 991.9 756 66.0
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 6.1e-287 990.7 756 65.6
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 6.1e-287 990.7 777 64.7
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.0e-286 989.9 755 66.0
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 1.8e-286 989.2 753 66.0
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 1.8e-286 989.2 777 65.1
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 2.3e-286 988.8 754 65.6
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 2.3e-286 988.8 778 64.9
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.5e-285 985.3 778 64.0
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 4.3e-285 984.6 775 64.8
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 7.4e-285 983.8 778 64.4
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 3.7e-284 981.5 778 64.5
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 6.3e-284 980.7 758 64.8
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.5e-282 976.1 754 65.4
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.1e-280 969.9 756 64.2
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 3.2e-280 968.4 757 64.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 3.2e-280 968.4 777 62.7
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 5.5e-280 967.6 772 64.4
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 5.5e-280 967.6 771 64.3
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.4e-278 963.0 776 63.9
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 5.1e-278 961.1 722 66.9
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.1e-277 959.9 771 63.2
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.6e-277 958.7 778 62.7
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 5.7e-277 957.6 777 62.4
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.7e-277 957.6 777 62.4
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 5.7e-277 957.6 778 62.6
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.8e-276 954.5 777 62.3
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 8.2e-276 953.7 777 61.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.4e-275 953.0 760 63.6
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.4e-275 953.0 776 63.4
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.8e-275 952.6 837 61.3
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 5.9e-274 947.6 779 61.5
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 7.7e-274 947.2 807 62.0
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 7.7e-274 947.2 784 62.1
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 3.2e-272 941.8 770 61.9
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 9.4e-272 940.3 770 62.5
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 6.1e-271 937.6 781 61.3
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 3.0e-270 935.3 819 60.2
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 2.8e-268 928.7 769 61.4
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 7.7e-266 920.6 769 62.3
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.0e-265 920.2 756 64.9
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.7e-265 919.5 783 61.0
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.7e-265 919.5 783 60.2
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 8.5e-265 917.1 779 60.5
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.1e-264 916.8 781 60.9
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.9e-264 916.0 785 60.0
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 5.5e-264 914.4 768 61.2
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 9.4e-264 913.7 778 60.5
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.6e-263 912.9 777 60.1
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 8.0e-263 910.6 777 59.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 8.0e-263 910.6 779 60.1
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 5.2e-262 907.9 807 58.0
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.3e-260 903.3 779 60.3
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.2e-260 900.6 777 60.7
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.4e-259 899.8 781 60.1
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.8e-259 899.4 778 60.0
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 9.1e-259 897.1 778 61.2
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.3e-257 893.3 769 59.9
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 5.0e-257 891.3 781 59.8
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.6e-253 879.0 764 61.0
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 3.7e-252 875.2 706 63.5
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 6.3e-252 874.4 757 60.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 3.5e-250 868.6 767 58.8
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.3e-249 866.7 756 58.1
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 8.6e-249 864.0 781 57.7
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.0e-246 857.1 769 58.3
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.6e-239 833.2 721 61.9
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.4e-238 830.1 772 57.4
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.1e-235 820.5 684 63.6
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.7e-233 813.1 773 54.5
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.9e-233 812.0 757 56.8
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.9e-232 809.7 768 56.6
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 8.0e-231 804.3 773 55.9
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 3.6e-207 725.7 737 53.7
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.4e-187 660.6 727 47.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.1e-182 642.9 754 46.0
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.5e-178 629.4 719 46.6
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 9.0e-174 614.8 735 45.9
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 2.6e-173 613.2 768 44.8
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 8.5e-172 608.2 421 69.6
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.2e-171 605.9 756 46.8
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 6.7e-161 572.0 422 69.4
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 3.1e-158 563.1 737 42.7
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 7.5e-144 515.4 387 65.1
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 7.5e-144 515.4 387 65.1
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 7.0e-142 508.8 394 64.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.7e-138 496.9 553 48.1
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 7.5e-136 488.8 276 83.0
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.1e-115 421.8 463 52.1
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.3e-115 420.2 455 50.1
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.9e-113 412.1 255 78.0
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 6.0e-101 372.9 744 35.9
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-73 282.0 269 54.6
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.5e-67 261.9 755 28.6
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.8e-49 201.8 289 40.8
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.9e-46 191.8 198 51.5
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.7e-45 187.2 142 64.1
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.3e-36 158.3 149 61.1
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.0e-36 157.5 82 80.5
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 9.8e-27 126.3 65 78.5
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.4e-25 121.7 137 46.7
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-22 112.1 138 44.2
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 6.8e-12 77.0 103 41.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 2.2e-10 72.0 53 64.2
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 2.9e-10 71.6 46 71.7
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 5.4e-09 67.4 87 48.3
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 3.5e-08 64.7 39 69.2


User provided reference genes

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