Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.9e-36 155.2 74 100.0
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.6e-33 144.8 75 94.7
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 3.4e-33 144.4 74 91.9
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.9e-32 141.4 76 94.7
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 3.2e-31 137.9 74 89.2
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 7.1e-31 136.7 73 87.7
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 9.3e-31 136.3 72 88.9
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.2e-30 136.0 75 89.3
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 3.5e-30 134.4 75 88.0
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 3.5e-30 134.4 75 86.7
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 8.7e-29 129.8 74 85.1
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 2.5e-28 128.3 76 84.2
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 2.5e-28 128.3 75 82.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 4.3e-28 127.5 73 82.2
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 5.6e-28 127.1 74 86.5
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.3e-27 125.9 73 80.8
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.6e-27 125.6 81 80.2
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.6e-27 125.6 72 84.7
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-27 125.6 75 80.0
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.6e-27 124.4 70 87.1
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 3.6e-27 124.4 70 87.1
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 6.2e-27 123.6 70 87.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.1e-26 122.9 72 83.3
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.4e-26 122.5 72 77.8
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 1.4e-26 122.5 77 83.1
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 2.4e-26 121.7 78 82.1
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 3.1e-26 121.3 76 77.6
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 1.2e-25 119.4 75 77.3
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.5e-25 119.0 74 79.7
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 4.4e-25 117.5 80 72.5
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 5.8e-25 117.1 78 79.5
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 5.8e-25 117.1 75 74.7
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 5.8e-25 117.1 72 75.0
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 7.6e-25 116.7 70 81.4
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.3e-24 115.9 74 78.4
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.3e-24 115.9 67 79.1
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-24 115.5 71 76.1
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.7e-24 115.5 76 75.0
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.7e-24 115.5 76 75.0
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 2.2e-24 115.2 74 78.4
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.8e-24 114.4 72 76.4
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.1e-23 112.8 74 77.0
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-23 112.1 69 78.3
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.4e-23 111.7 74 74.3
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.1e-22 108.6 72 69.4
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 2.1e-22 108.6 72 77.8
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 2.7e-22 108.2 83 72.3
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 6.0e-22 107.1 79 72.2
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 2.3e-21 105.1 71 74.6
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 3.0e-21 104.8 74 74.3
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.0e-21 104.8 74 74.3
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.0e-21 104.8 74 74.3
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 3.9e-21 104.4 76 72.4
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 5.1e-21 104.0 85 65.9
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.1e-21 104.0 71 71.8
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 8.7e-21 103.2 74 73.0
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.3e-20 101.3 70 68.6
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.3e-20 100.9 74 64.9
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 5.6e-20 100.5 87 63.2
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 7.3e-20 100.1 73 67.1
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 7.3e-20 100.1 82 65.9
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 7.3e-20 100.1 72 70.8
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 1.6e-19 99.0 82 64.6
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.6e-19 99.0 71 70.4
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 3.6e-19 97.8 71 71.8
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 8.1e-19 96.7 74 64.9
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 2.4e-18 95.1 84 59.5
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 5.3e-18 94.0 68 67.6
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 5.3e-18 94.0 83 60.2
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.3e-18 94.0 69 72.5
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 5.3e-18 94.0 66 72.7
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.9e-18 93.6 70 64.3
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 6.9e-18 93.6 68 64.7
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 9.0e-18 93.2 81 64.2
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 9.0e-18 93.2 72 63.9
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.5e-17 92.4 75 62.7
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 2.6e-17 91.7 71 69.0
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.6e-17 91.7 71 69.0
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.6e-17 91.7 71 69.0
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.6e-17 91.7 71 69.0
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 4.5e-17 90.9 85 62.4
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 4.5e-17 90.9 85 62.4
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 5.8e-17 90.5 74 66.2
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 5.8e-17 90.5 70 68.6
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 5.8e-17 90.5 66 65.2
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 7.6e-17 90.1 76 64.5
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 7.6e-17 90.1 76 64.5
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.3e-16 89.4 85 61.2
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.3e-16 89.4 85 61.2
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-16 89.0 85 61.2
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.7e-16 89.0 83 61.4
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.2e-16 88.6 83 61.4
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.9e-16 88.2 72 66.7
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.9e-16 88.2 56 76.8
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.9e-16 88.2 73 65.8
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-16 87.8 82 59.8
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-16 87.8 82 59.8
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-16 87.8 82 59.8
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 3.8e-16 87.8 82 59.8
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 3.8e-16 87.8 82 59.8
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 3.8e-16 87.8 81 63.0
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.9e-16 87.4 70 65.7
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 4.9e-16 87.4 78 62.8
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 4.9e-16 87.4 72 59.7
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 64.4
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 64.4
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 8.4e-16 86.7 76 60.5
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 64.4
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 64.4
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 64.4
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 64.4
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.1e-15 86.3 79 58.2
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-15 86.3 73 63.0
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 73 63.0
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.1e-15 86.3 73 63.0
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.1e-15 86.3 65 61.5
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.4e-15 85.9 83 59.0
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-15 85.5 84 58.3
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-15 85.5 84 58.3
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.4e-15 85.1 72 63.9
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 3.2e-15 84.7 72 62.5
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 3.2e-15 84.7 72 62.5
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 3.2e-15 84.7 72 62.5
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 3.2e-15 84.7 72 62.5
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 4.2e-15 84.3 72 62.5
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 4.2e-15 84.3 73 63.0
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 4.2e-15 84.3 72 62.5
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.4e-15 84.0 75 57.3
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 5.4e-15 84.0 84 58.3
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 7.1e-15 83.6 73 56.2
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 2.7e-14 81.6 63 65.1
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.5e-14 81.3 61 63.9
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 7.9e-14 80.1 63 58.7
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.3e-13 79.3 64 57.8
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.8e-13 79.0 65 63.1
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 3.0e-13 78.2 82 54.9
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 3.9e-13 77.8 78 56.4
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 5.1e-13 77.4 64 56.2
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 6.7e-13 77.0 78 51.3
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 6.7e-13 77.0 70 47.1
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.5e-12 75.9 60 61.7
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.5e-12 75.9 78 53.8
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.9e-12 75.5 64 60.9
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.4e-10 69.3 75 49.3
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 1.4e-10 69.3 74 45.9
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.8e-10 68.9 93 44.1
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 4.0e-10 67.8 53 69.8
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 6.9e-10 67.0 88 44.3
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 6.9e-10 67.0 85 45.9
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 8.4e-08 60.1 73 43.8


User provided reference genes

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