Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.2e-164 583.2 298 100.0
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 3.5e-153 545.0 298 93.3
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.8e-142 508.8 298 84.9
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 3.1e-141 505.4 298 84.2
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.9e-139 498.8 298 83.9
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 8.3e-139 497.3 298 83.6
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.9e-138 496.1 298 83.9
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 2.4e-138 495.7 298 84.9
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 1.2e-137 493.4 298 83.2
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 2.3e-136 489.2 298 84.6
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 3.3e-135 485.3 298 80.9
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 5.6e-135 484.6 298 80.9
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 7.3e-135 484.2 293 81.2
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.7e-134 481.5 298 79.9
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 4.7e-134 481.5 298 80.2
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 6.2e-134 481.1 298 79.2
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.1e-133 480.3 298 79.9
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 5.2e-133 478.0 298 79.5
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 6.8e-133 477.6 295 81.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.5e-132 476.5 298 78.9
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 2.0e-132 476.1 298 79.5
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 4.4e-132 474.9 298 79.9
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 7.5e-132 474.2 298 80.5
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.3e-131 473.4 298 79.5
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 2.9e-131 472.2 298 78.9
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 3.7e-131 471.9 303 78.5
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 4.9e-131 471.5 298 79.9
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.9e-131 471.5 296 78.7
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.9e-131 471.5 296 78.7
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 6.4e-131 471.1 306 78.8
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 8.3e-131 470.7 299 77.3
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 1.1e-130 470.3 295 78.0
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.9e-130 469.5 298 78.9
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 2.4e-130 469.2 298 78.2
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 3.2e-130 468.8 298 78.2
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 5.4e-130 468.0 298 78.9
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 5.4e-130 468.0 298 77.5
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 9.2e-130 467.2 306 78.1
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.6e-129 466.5 298 78.2
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.1e-129 466.1 298 75.8
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.1e-129 466.1 298 75.8
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 6.0e-129 464.5 296 78.0
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.0e-128 463.8 298 77.9
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.7e-128 463.0 298 77.5
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.3e-128 462.6 298 78.5
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 3.0e-128 462.2 295 76.9
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 3.9e-128 461.8 298 77.9
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 5.1e-128 461.5 298 76.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 8.6e-128 460.7 298 78.2
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 2.5e-127 459.1 298 76.2
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 4.3e-127 458.4 342 69.9
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 5.6e-127 458.0 298 76.5
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 9.5e-127 457.2 298 77.5
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 9.5e-127 457.2 298 75.5
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.2e-126 456.8 316 73.4
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 1.2e-126 456.8 295 75.9
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 1.6e-126 456.4 298 76.8
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.6e-126 456.4 295 75.6
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 2.8e-126 455.7 316 73.4
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 4.7e-126 454.9 298 77.2
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 4.7e-126 454.9 298 76.8
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 4.7e-126 454.9 298 74.2
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 6.2e-126 454.5 298 76.8
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 2.3e-125 452.6 298 76.8
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 2.3e-125 452.6 295 75.3
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 4.0e-125 451.8 298 75.5
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 4.0e-125 451.8 283 79.9
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.8e-125 451.1 298 76.2
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.8e-125 451.1 316 72.5
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.2e-124 450.3 296 75.3
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 2.6e-124 449.1 295 73.9
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 4.4e-124 448.4 298 74.8
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 7.6e-124 447.6 298 75.8
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.3e-123 446.8 298 73.8
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.7e-123 446.4 296 75.0
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 4.9e-123 444.9 296 74.3
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 6.4e-123 444.5 296 74.3
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 8.4e-123 444.1 296 75.0
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.1e-122 443.7 296 74.0
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.4e-122 443.4 296 74.3
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 1.4e-122 443.4 296 74.3
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.2e-122 442.2 298 73.5
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 4.1e-122 441.8 294 74.8
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 4.1e-122 441.8 298 74.2
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.2e-121 440.3 283 77.4
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 2.1e-121 439.5 298 73.8
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 2.7e-121 439.1 296 74.0
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 2.7e-121 439.1 296 74.0
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 4.6e-121 438.3 298 72.1
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 7.8e-121 437.6 278 79.1
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.0e-120 437.2 295 73.6
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.3e-120 436.8 295 73.6
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.3e-120 436.8 298 71.5
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.7e-120 436.4 284 76.4
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 2.3e-120 436.0 296 73.3
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 3.3e-119 432.2 297 71.0
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 3.3e-119 432.2 296 73.0
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.6e-119 430.6 250 82.8
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.2e-118 430.3 298 73.5
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 8.1e-118 427.6 298 71.8
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 4.0e-117 425.2 289 73.0
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 4.0e-117 425.2 298 72.1
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 4.0e-117 425.2 269 77.7
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 2.0e-116 422.9 297 71.0
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 6.4e-115 417.9 296 72.0
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 3.5e-113 412.1 298 68.5
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 7.8e-113 411.0 288 71.9
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.7e-112 407.5 321 66.4
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 8.7e-104 380.9 298 65.4
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.5e-103 380.2 298 66.8
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 4.0e-101 372.1 298 67.1
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.4e-98 362.8 219 80.4
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.0e-96 355.9 280 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 8.1e-94 347.8 295 58.6
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.9e-91 339.3 295 58.0
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 8.4e-91 337.8 224 75.9
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.9e-90 336.7 224 73.2
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 5.5e-90 335.1 216 74.5
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.0e-88 330.9 291 58.1
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 8.7e-88 327.8 295 56.3
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.3e-87 325.9 295 55.9
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 9.6e-87 324.3 224 71.9
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 2.8e-86 322.8 262 57.6
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 2.4e-85 319.7 296 55.4
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.4e-82 310.5 281 59.8
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 4.2e-82 308.9 220 68.6
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 4.8e-78 295.4 252 63.9
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.2e-73 280.8 178 78.1
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 5.1e-72 275.4 257 54.1
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 8.2e-70 268.1 178 77.0
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.8e-64 250.4 204 64.7
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.4e-61 240.0 150 78.7
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 9.4e-58 228.0 150 76.7
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 6.1e-57 225.3 162 65.4
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 7.5e-55 218.4 143 69.9
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 9.1e-53 211.5 135 73.3
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 3.4e-47 193.0 266 39.1
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.8e-46 189.9 107 91.6
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 2.4e-45 186.8 141 67.4
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 1.5e-42 177.6 183 54.6
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 2.5e-34 150.2 307 33.6
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 3.3e-34 149.8 132 62.1
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.0e-32 144.8 99 68.7
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 3.0e-32 143.3 108 67.6
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 5.0e-27 125.9 270 30.0
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 9.5e-26 121.7 116 58.6
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.7e-22 110.9 82 65.9
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 6.0e-20 102.4 128 47.7
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 1.0e-19 101.7 65 76.9
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 7.3e-18 95.5 103 52.4
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 6.2e-17 92.4 103 51.5
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 4.6e-12 76.3 97 47.4
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.0e-11 75.1 43 86.0
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 1.8e-08 64.3 39 76.9
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 6.8e-08 62.4 53 60.4
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.0e-07 60.8 54 57.4
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 1.3e-06 58.2 60 48.3
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 54 53.7
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 54 53.7


User provided reference genes

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