Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G215300 Phaseolus vulgaris HOM05D008404 ORTHO05D000001 3.8e-133 479.2 481 100.0
VMungo1309G1008 Vigna mungo HOM05D008404 ORTHO05D000001 1.2e-81 308.1 244 68.4
VMungo1309G1161 Vigna mungo HOM05D008404 ORTHO05D000001 8.9e-74 282.0 269 59.9
VMungo1309G0222 Vigna mungo HOM05D008404 ORTHO05D000001 8.3e-56 222.2 184 63.0
VMungo1309G1384 Vigna mungo HOM05D008404 ORTHO05D000001 3.2e-55 220.3 226 53.1
VMungo1309G0115 Vigna mungo HOM05D008404 ORTHO05D000001 2.2e-32 144.4 211 37.9
VMungo1309G2055 Vigna mungo HOM05D008404 ORTHO05D000001 4.8e-27 126.7 195 39.5
Psat2g189800 Pisum sativum HOM05D008404 ORTHO05D000001 7.6e-25 119.4 167 38.3
Psat5g034040 Pisum sativum HOM05D008404 ORTHO05D000001 5.5e-23 113.2 203 32.0
TPR.G32556 Trifolium pratense HOM05D000002 ORTHO05D000001 4.8e-19 100.1 181 30.9
Psat6g031960 Pisum sativum HOM05D008404 ORTHO05D000001 1.8e-18 98.2 176 31.8
Ca_02878_v3 Cicer arietinum L. HOM05D008404 ORTHO05D000001 2.6e-17 94.4 180 25.6
TPR.G12295 Trifolium pratense HOM05D000002 ORTHO05D000001 4.5e-17 93.6 181 29.8
CANSAT25G2785 Cannabis sativa HOM05D000002 ORTHO05D000001 2.2e-16 91.3 183 27.3
Lalb_Chr06g0171641 Lupinus albus HOM05D000002 ORTHO05D000001 2.2e-16 91.3 180 27.2
TPR.G32053 Trifolium pratense HOM05D000002 ORTHO05D000001 2.2e-16 91.3 180 28.3
Psat1g047720 Pisum sativum HOM05D000002 ORTHO05D000001 6.5e-16 89.7 196 27.6
Psat6g037960 Pisum sativum HOM05D008404 ORTHO05D000001 8.4e-16 89.4 172 30.8
Atru.chr13.248 Acer truncatum HOM05D000002 ORTHO05D000001 2.5e-15 87.8 200 26.5
Atru.chr2.3010 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-14 85.5 200 26.0
Lalb_Chr05g0228251 Lupinus albus HOM05D008404 ORTHO05D000001 1.2e-14 85.5 181 25.4
Lalb_Chr05g0226751 Lupinus albus HOM05D008404 ORTHO05D000001 1.0e-13 82.4 180 24.4
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 1.9e-12 78.2 207 29.0
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-12 77.8 209 27.8
TPR.G25216 Trifolium pratense HOM05D000319 ORTHO05D000001 2.5e-12 77.8 137 29.9
GSVIVG01016108001 Vitis vinifera HOM05D000002 ORTHO05D000001 2.5e-12 77.8 180 26.7
Atru.chr2.3036 Acer truncatum HOM05D000002 ORTHO05D000001 3.3e-12 77.4 210 26.7
Psat2g148280 Pisum sativum HOM05D008404 ORTHO05D000001 9.6e-12 75.9 107 35.5
RcHm_v2.0_Chr2g0129181 Rosa chinensis HOM05D000002 ORTHO05D000001 9.6e-12 75.9 222 27.0
CANSAT78G1493 Cannabis sativa HOM05D000002 ORTHO05D000001 2.1e-11 74.7 147 28.6
FvH4_5g20624 Fragaria vesca HOM05D000002 ORTHO05D000001 2.8e-11 74.3 210 25.2
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 2.8e-11 74.3 151 30.5
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 3.7e-11 73.9 202 27.2
Psat0s6388g0040 Pisum sativum HOM05D008404 ORTHO05D000001 3.7e-11 73.9 115 32.2
Atru.chr10.264 Acer truncatum HOM05D000002 ORTHO05D000001 4.8e-11 73.6 231 26.0
CSS0025666 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-11 73.6 200 29.5
Ciclev10013318m.g Citrus clementina HOM05D000002 ORTHO05D000001 4.8e-11 73.6 188 27.1
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 6.3e-11 73.2 200 29.0
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 8.2e-11 72.8 199 27.6
MD17G1248200 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-10 72.4 185 30.8
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 1.1e-10 72.4 154 29.9
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-10 72.0 205 26.8
Sopen12g023510 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-10 70.9 213 25.4
PSO541G5397 Papaver somniferum HOM05D000002 ORTHO05D000001 5.3e-10 70.1 202 25.2
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 6.9e-10 69.7 138 30.4
FvH4_2g26161 Fragaria vesca HOM05D000083 ORTHO05D001732 9.0e-10 69.3 182 25.3
Psat0s2197g0120 Pisum sativum HOM05D000002 ORTHO05D000001 9.0e-10 69.3 103 35.0
PSO384G1753 Papaver somniferum HOM05D000002 ORTHO05D000001 1.2e-09 68.9 142 29.6
RcHm_v2.0_Chr2g0112811 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-09 68.9 135 31.9
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 1.5e-09 68.6 191 25.7
Ca_18488_v3 Cicer arietinum L. HOM05D008404 ORTHO05D000001 2.6e-09 67.8 202 26.7
Ca_29541_v3 Cicer arietinum L. HOM05D008404 ORTHO05D000001 2.6e-09 67.8 202 26.7
Psat6g241720 Pisum sativum HOM05D008404 ORTHO05D000001 2.6e-09 67.8 134 27.6
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-09 67.8 202 26.2
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-09 67.8 217 27.2
RcHm_v2.0_Chr7g0206011 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-09 67.8 210 25.7
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 4.5e-09 67.0 246 22.4
RcHm_v2.0_Chr5g0025271 Rosa chinensis HOM05D000002 ORTHO05D000001 4.5e-09 67.0 207 27.1
Aa31LG1G6100 Aethionema arabicum HOM05D000002 ORTHO05D000001 5.9e-09 66.6 169 26.6
Ca_02724_v3 Cicer arietinum L. HOM05D008404 ORTHO05D000001 5.9e-09 66.6 137 24.1
Migut.C00657 Erythranthe guttata HOM05D000002 ORTHO05D000001 7.6e-09 66.2 193 27.5
FvH4_3g07841 Fragaria vesca HOM05D000002 ORTHO05D000001 7.6e-09 66.2 202 24.3
Psat0s330g0080 Pisum sativum HOM05D008404 ORTHO05D000001 7.6e-09 66.2 138 29.0
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 1.0e-08 65.9 200 25.5
Sopen11g022270 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-08 65.9 201 26.4
Lalb_Chr13g0298801 Lupinus albus HOM05D008404 ORTHO05D000001 1.7e-08 65.1 121 28.1
RcHm_v2.0_Chr5g0022021 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-08 65.1 172 26.2
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 2.9e-08 64.3 217 24.4
RcHm_v2.0_Chr5g0004361 Rosa chinensis HOM05D000002 ORTHO05D000001 2.9e-08 64.3 197 27.9
BolC6t35286H Brassica oleracea HOM05D000002 ORTHO05D000001 3.8e-08 63.9 213 23.5
RcHm_v2.0_Chr2g0117741 Rosa chinensis HOM05D000002 ORTHO05D000001 3.8e-08 63.9 225 25.8
MD12G1020900 Malus domestica HOM05D000103 ORTHO05D000001 5.0e-08 63.5 137 29.9
Psat5g237400 Pisum sativum HOM05D008404 ORTHO05D000001 5.0e-08 63.5 92 31.5
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.0e-08 63.5 197 25.4
RcHm_v2.0_Chr1g0344491 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-08 63.5 190 27.4
RcHm_v2.0_Chr3g0482021 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-08 63.5 202 23.8
Sopen01g029710 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-08 63.5 204 24.5
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-08 63.2 198 25.8
CSS0021297 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-08 63.2 197 27.4
CANSAT21G1279 Cannabis sativa HOM05D000002 ORTHO05D000001 6.5e-08 63.2 141 23.4
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 8.4e-08 62.8 151 28.5
RcHm_v2.0_Chr5g0077241 Rosa chinensis HOM05D000002 ORTHO05D000001 8.4e-08 62.8 182 26.4
Sopen04g008990 Solanum pennellii HOM05D000002 ORTHO05D000001 8.4e-08 62.8 213 24.4
Gorai.008G092500 Gossypium raimondii HOM05D000002 ORTHO05D000001 1.1e-07 62.4 199 26.6
FvH4_2g23291 Fragaria vesca HOM05D000002 ORTHO05D000001 1.4e-07 62.0 180 24.4
Nitab4.5_0000871g0050 Nicotiana tabacum HOM05D002833 ORTHO05D003210 1.4e-07 62.0 172 25.6
Migut.E01000 Erythranthe guttata HOM05D000002 ORTHO05D000001 1.9e-07 61.6 153 26.8
MD11G1242500 Malus domestica HOM05D000002 ORTHO05D000001 1.9e-07 61.6 213 23.0
Nitab4.5_0000305g0090 Nicotiana tabacum HOM05D002833 ORTHO05D000001 1.9e-07 61.6 174 25.9
PSO339G0642 Papaver somniferum HOM05D000002 ORTHO05D000001 1.9e-07 61.6 224 22.8
PSO541G1410 Papaver somniferum HOM05D000002 ORTHO05D000001 1.9e-07 61.6 195 26.7
Psat5g300720 Pisum sativum HOM05D008404 ORTHO05D000001 1.9e-07 61.6 90 34.4
RcHm_v2.0_Chr7g0206441 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-07 61.6 195 27.7
Dinv39044 Davidia involucrata HOM05D000016 ORTHO05D000109 2.5e-07 61.2 149 28.2
Oeu040352.1 Olea europaea HOM05D001270 ORTHO05D001099 2.5e-07 61.2 203 27.1
Psat2g175040 Pisum sativum HOM05D008404 ORTHO05D000001 2.5e-07 61.2 113 31.0
RcHm_v2.0_Chr1g0366871 Rosa chinensis HOM05D000062 ORTHO05D000043 2.5e-07 61.2 212 25.0
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.5e-07 61.2 174 23.6
Eucgr.F03845 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.2e-07 60.8 118 28.0
HanXRQChr14g0429151 Helianthus annuus HOM05D000002 ORTHO05D000001 3.2e-07 60.8 169 26.6
FvH4_5g05651 Fragaria vesca HOM05D000002 ORTHO05D000001 4.2e-07 60.5 150 28.0
TPR.G512 Trifolium pratense HOM05D011146 ORTHO05D012706 4.2e-07 60.5 162 22.8
FvH4_6g38191 Fragaria vesca HOM05D021504 ORTHO05D025385 5.5e-07 60.1 139 25.9
HanXRQChr07g0187191 Helianthus annuus HOM05D000002 ORTHO05D000001 5.5e-07 60.1 186 24.7
Aa31LG3G5060 Aethionema arabicum HOM05D000002 ORTHO05D000001 7.2e-07 59.7 163 25.2
CsaV3_7G000640 Cucumis sativus L. HOM05D000002 ORTHO05D000001 7.2e-07 59.7 227 22.9
TPR.G665 Trifolium pratense HOM05D000002 ORTHO05D000001 7.2e-07 59.7 117 28.2
CSS0006924 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.3e-07 59.3 212 25.0
HanXRQChr17g0568341 Helianthus annuus HOM05D000002 ORTHO05D000001 9.3e-07 59.3 214 27.1
TAR386G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 9.3e-07 59.3 192 24.5
Atru.chr2.1090 Acer truncatum HOM05D000034 ORTHO05D000001 1.2e-06 58.9 129 22.5
CSS0045631 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-06 58.9 200 25.5
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.2e-06 58.9 185 23.2
Psat6g012200 Pisum sativum HOM05D008404 ORTHO05D000001 1.2e-06 58.9 204 23.5
Rhsim03G0193600 Rhododendron simsii HOM05D000100 ORTHO05D000052 1.2e-06 58.9 196 26.5
CSS0020274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-06 58.5 195 27.2
FvH4_4g24051 Fragaria vesca HOM05D000002 ORTHO05D000001 1.6e-06 58.5 184 27.2
Peaxi162Scf00460g00045 Petunia axillaris HOM05D002833 ORTHO05D000001 1.6e-06 58.5 159 23.3
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.1e-06 58.2 158 23.4
PSO729G0199 Papaver somniferum HOM05D000002 ORTHO05D000001 2.1e-06 58.2 142 27.5
QL08p052300 Quercus lobata HOM05D000002 ORTHO05D000001 2.1e-06 58.2 170 27.1
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.7e-06 57.8 217 25.8
TPR.G34891 Trifolium pratense HOM05D004978 ORTHO05D005621 2.7e-06 57.8 194 25.3
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-06 57.4 222 24.3
Psat5g041360 Pisum sativum HOM05D000002 ORTHO05D000001 3.5e-06 57.4 133 30.1
Sabra06G0056900 Salix brachista HOM05D000002 ORTHO05D000001 3.5e-06 57.4 135 28.1
MD14G1067200 Malus domestica HOM05D000002 ORTHO05D000001 4.6e-06 57.0 143 26.6
Rhsim02G0228300 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.6e-06 57.0 212 20.8
RcHm_v2.0_Chr1g0337651 Rosa chinensis HOM05D000002 ORTHO05D000001 4.6e-06 57.0 200 23.5
RcHm_v2.0_Chr1g0339131 Rosa chinensis HOM05D000002 ORTHO05D000001 4.6e-06 57.0 185 25.9
Sopen07g003750 Solanum pennellii HOM05D000002 ORTHO05D000001 4.6e-06 57.0 223 26.0
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.6e-06 57.0 216 24.5
CSS0009910 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-06 56.6 238 23.9
CSS0017162 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-06 56.6 207 23.2
CSS0020834 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-06 56.6 204 26.0
Peaxi162Scf00019g00041 Petunia axillaris HOM05D002833 ORTHO05D000001 6.1e-06 56.6 147 25.2
Psat0s3478g0040 Pisum sativum HOM05D008404 ORTHO05D000001 6.1e-06 56.6 90 33.3
RcHm_v2.0_Chr3g0448481 Rosa chinensis HOM05D009166 ORTHO05D000001 6.1e-06 56.6 209 25.4
RcHm_v2.0_Chr7g0178931 Rosa chinensis HOM05D000002 ORTHO05D000001 6.1e-06 56.6 165 26.1
Sopen05g011750 Solanum pennellii HOM05D000002 ORTHO05D000001 7.9e-06 56.2 141 26.2


User provided reference genes

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