Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.2e-260 902.5 434 100.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 7.1e-248 860.1 434 94.9
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 3.0e-246 854.7 435 93.8
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.9e-231 803.5 434 87.3
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 5.1e-230 800.8 434 87.6
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.9e-224 782.3 460 81.3
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 7.2e-224 780.4 434 83.9
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 6.1e-223 777.3 434 84.3
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.3e-209 733.0 427 78.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.3e-209 733.0 427 78.7
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.7e-209 732.6 429 78.8
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 5.0e-209 731.1 433 77.4
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.9e-208 729.2 431 78.7
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.5e-208 728.8 427 79.2
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.6e-207 726.1 429 79.0
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.1e-207 725.7 426 78.9
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 3.6e-207 724.9 429 79.0
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 6.1e-207 724.2 426 79.3
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.0e-206 721.8 443 77.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 5.2e-206 721.1 426 78.4
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 6.7e-206 720.7 427 78.5
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-205 719.9 429 78.1
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-205 719.9 429 78.1
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-205 719.5 427 78.2
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.0e-205 719.2 427 77.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.0e-205 719.2 433 77.8
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.6e-205 718.8 436 77.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 5.7e-205 717.6 429 77.9
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 7.4e-205 717.2 429 78.1
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.2e-204 715.7 427 77.8
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.2e-204 715.7 427 77.5
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.8e-204 715.3 429 78.6
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.7e-204 714.9 426 77.9
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 4.8e-204 714.5 427 78.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.4e-203 713.0 436 76.8
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.2e-202 709.9 429 77.4
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.0e-201 706.8 430 76.3
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-201 705.3 428 77.3
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 5.0e-201 704.5 428 77.3
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.1e-199 697.6 425 76.9
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 8.0e-199 697.2 442 74.4
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 8.8e-198 693.7 426 76.3
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.0e-197 692.6 423 74.2
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 7.5e-197 690.6 426 74.4
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.8e-196 688.7 429 75.1
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 8.2e-196 687.2 424 75.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 8.2e-196 687.2 426 73.9
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 9.1e-195 683.7 429 74.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 2.0e-194 682.6 421 76.2
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 5.0e-193 677.9 426 74.9
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 8.5e-193 677.2 429 73.0
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.6e-191 671.8 436 72.9
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.1e-191 671.0 442 72.6
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 8.0e-191 670.6 426 72.5
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.3e-190 669.1 440 72.7
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.2e-189 666.8 436 72.5
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.5e-189 664.1 425 74.1
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 9.8e-189 663.7 406 76.4
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 1.7e-188 662.9 427 73.5
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-188 662.9 445 71.5
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-188 662.9 443 72.0
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.8e-188 662.1 427 71.7
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.4e-187 657.9 446 71.1
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.7e-185 652.9 426 71.4
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 6.6e-185 651.0 429 71.3
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.6e-185 650.6 408 74.8
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.9e-184 649.4 427 70.0
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 5.5e-184 647.9 421 72.0
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 7.2e-184 647.5 421 72.4
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.6e-183 646.4 406 74.4
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.6e-183 645.2 366 80.6
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.2e-182 641.3 429 70.6
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.8e-182 641.0 430 70.5
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.2e-181 640.2 432 66.2
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.4e-181 638.3 432 71.8
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.2e-180 636.0 433 67.0
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 8.3e-180 634.0 436 67.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.3e-180 634.0 426 70.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.4e-179 633.3 436 66.7
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.4e-179 633.3 432 66.7
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.4e-179 632.5 433 66.3
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.1e-179 632.1 437 66.4
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 3.1e-179 632.1 433 67.2
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 2.7e-178 629.0 439 66.3
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 2.7e-178 629.0 439 66.3
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 5.9e-178 627.9 436 69.3
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 7.8e-178 627.5 442 65.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.3e-177 626.7 435 66.2
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 2.3e-177 625.9 432 69.7
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.3e-177 625.9 432 66.9
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.9e-177 625.2 458 67.2
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 7.3e-176 620.9 437 68.2
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.8e-174 616.3 433 66.3
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 5.8e-173 611.3 471 63.7
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 9.8e-173 610.5 431 68.0
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 3.7e-172 608.6 451 63.6
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.7e-170 602.4 433 67.9
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.0e-169 599.0 442 63.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 6.6e-169 597.8 434 68.2
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 4.7e-167 591.7 340 79.7
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 5.2e-166 588.2 356 77.0
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 5.2e-166 588.2 436 62.6
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 2.9e-164 582.4 364 74.7
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-162 577.0 403 67.2
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 3.5e-162 575.5 380 73.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-161 573.2 464 60.3
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.6e-159 565.5 400 68.8
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.3e-158 562.8 430 60.2
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 3.1e-158 562.4 509 58.5
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.2e-157 560.5 397 65.7
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 7.5e-157 557.8 290 92.8
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 3.9e-153 545.4 442 60.0
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.8e-151 539.3 445 60.4
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 6.8e-150 534.6 434 61.3
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.3e-148 530.4 442 54.3
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.9e-147 526.6 443 54.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 6.0e-146 521.5 308 77.3
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.9e-145 518.8 320 75.6
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 5.6e-136 488.4 471 54.4
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 6.9e-126 454.9 458 52.2
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.2e-123 446.0 418 57.4
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 9.3e-123 444.5 290 72.4
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.8e-121 440.3 347 61.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.3e-120 435.6 347 59.9
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 4.3e-112 409.1 313 64.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.4e-112 408.3 433 53.6
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-108 396.4 263 72.2
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.2e-107 392.9 373 49.1
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.2e-90 337.8 381 43.3
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 4.4e-88 329.3 420 41.4
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 1.4e-86 324.3 281 59.8
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.8e-86 323.9 175 90.3
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 8.5e-84 315.1 213 71.4
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.1e-83 314.7 184 76.6
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.9e-67 260.8 222 66.7
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.4e-54 217.2 119 82.4
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.1e-51 208.4 194 53.1
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 4.0e-49 199.9 182 57.7
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 5.8e-48 196.1 157 63.7
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.9e-43 181.0 241 45.6
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.8e-42 177.2 239 45.6
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-40 171.8 94 87.2
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.7e-39 167.9 204 45.6
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.6e-37 161.4 234 39.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.1e-35 155.2 85 83.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-35 154.5 109 68.8
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.1e-30 136.0 239 38.9
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 2.4e-25 120.9 70 84.3
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.9e-23 114.0 85 65.9
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 8.4e-23 112.5 62 82.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 9.6e-19 99.0 135 38.5
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 9.0e-17 92.4 71 56.3
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.7e-12 76.3 80 52.5
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.6e-08 64.3 36 80.6
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 5.8e-08 63.2 61 57.4
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.5e-06 56.6 42 59.5


User provided reference genes

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