Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G202600 Phaseolus vulgaris HOM05D007559 ORTHO05D009642 6.2e-166 588.2 514 100.0
Phvul.008G089500 Phaseolus vulgaris HOM05D007559 ORTHO05D009642 2.5e-151 539.7 515 95.5
VMungo1383G3445 Vigna mungo HOM05D007559 ORTHO05D009642 1.7e-139 500.4 279 87.5
Glyma.09G279300 Glycine max HOM05D007559 ORTHO05D009642 9.3e-138 494.6 279 85.3
Lj1g0021884 Lotus japonicus HOM05D007559 ORTHO05D009642 1.0e-123 448.0 283 78.8
Ca_07735_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 3.8e-123 446.0 280 78.2
TPR.G18675 Trifolium pratense HOM05D007559 ORTHO05D009642 2.4e-117 426.8 277 76.2
Lalb_Chr05g0229371 Lupinus albus HOM05D007559 ORTHO05D009642 2.0e-116 423.7 278 75.5
Psat3g121880 Pisum sativum HOM05D007559 ORTHO05D009642 3.8e-115 419.5 280 74.6
Medtr7g072070 Medicago truncatula HOM05D007559 ORTHO05D009642 2.5e-114 416.8 278 75.2
Haze_21112 Corylus avellana HOM05D007559 ORTHO05D009642 1.0e-88 331.6 283 58.7
Cfa017088 Carpinus fangiana HOM05D007559 ORTHO05D009642 1.4e-88 331.3 283 58.7
Eucgr.A00644 Eucalyptus grandis HOM05D007559 ORTHO05D009642 1.0e-80 305.1 279 53.8
Potri.006G106400 Populus trichocarpa HOM05D007559 ORTHO05D009642 1.8e-80 304.3 269 56.5
Prupe.6G287300 Prunus persica HOM05D007559 ORTHO05D009642 6.8e-80 302.4 274 55.8
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 6.8e-80 302.4 269 57.6
Sabra06G0082800 Salix brachista HOM05D007559 ORTHO05D009642 1.2e-79 301.6 276 55.1
Dinv35437 Davidia involucrata HOM05D007559 ORTHO05D009642 3.4e-79 300.1 262 57.6
Ciclev10013613m.g Citrus clementina HOM05D007559 ORTHO05D009642 6.3e-78 295.8 277 54.2
Manes.09G114100 Manihot esculenta HOM05D007559 ORTHO05D009642 5.4e-77 292.7 272 52.9
Atru.chr8.2360 Acer truncatum HOM05D007559 ORTHO05D009642 1.6e-76 291.2 280 53.2
Thecc.05G003800 Theobroma cacao HOM05D007559 ORTHO05D009642 1.0e-75 288.5 266 51.9
MD12G1182800 Malus domestica HOM05D007559 ORTHO05D009642 2.9e-75 287.0 274 54.0
Sed0024504 Sechium edule HOM05D007559 ORTHO05D009642 8.6e-75 285.4 269 51.3
FvH4_6g10340 Fragaria vesca HOM05D007559 ORTHO05D009642 1.5e-74 284.6 270 52.6
FAN05G3361 Fragaria x ananassa HOM05D007559 ORTHO05D009642 1.5e-74 284.6 271 52.4
FAN14G4426 Fragaria x ananassa HOM05D007559 ORTHO05D009642 3.3e-74 283.5 270 52.2
FAN09G3233 Fragaria x ananassa HOM05D007559 ORTHO05D009642 2.8e-73 280.4 271 51.3
FAN09G4021 Fragaria x ananassa HOM05D007559 ORTHO05D009642 6.1e-73 279.3 268 52.6
Nn2g13304 Nelumbo nucifera HOM05D007559 ORTHO05D009642 6.1e-73 279.3 272 51.8
TAR623G1207 Trochodendron aralioides HOM05D007559 ORTHO05D009642 6.1e-73 279.3 260 54.6
FAN02G3738 Fragaria x ananassa HOM05D007559 ORTHO05D009642 8.0e-73 278.9 268 52.2
CsaV3_3G033270 Cucumis sativus L. HOM05D007559 ORTHO05D009642 1.4e-72 278.1 269 50.6
MELO3C031038.2 Cucumis melo HOM05D007559 ORTHO05D009642 4.0e-72 276.6 269 50.9
MD04G1169100 Malus domestica HOM05D007559 ORTHO05D009642 4.0e-72 276.6 278 52.5
TWI77G1038 Tripterygium wilfordii HOM05D007559 ORTHO05D009642 5.2e-72 276.2 264 54.5
Sc02g0000710 Simmondsia chinensis HOM05D007559 ORTHO05D009642 3.4e-71 273.5 274 53.3
CANSAT35G1217 Cannabis sativa HOM05D007559 ORTHO05D009642 1.4e-69 268.1 270 51.1
COL.COLO4_14426 Corchorus olitorius HOM05D007559 ORTHO05D009642 1.4e-69 268.1 266 50.0
TAR623G1276 Trochodendron aralioides HOM05D007559 ORTHO05D009642 1.4e-69 268.1 258 53.1
Duzib128G0753 Durio zibethinus HOM05D007559 ORTHO05D009642 2.7e-68 263.8 266 48.1
Ah.08g209840 Amaranthus hybridus HOM05D007559 ORTHO05D009642 3.9e-67 260.0 289 46.7
Aqoxy2G02373 Aquilegia oxysepala HOM05D007559 ORTHO05D009642 3.9e-67 260.0 263 51.0
Lsat_1_v5_gn_7_12941 Lactuca sativa HOM05D007559 ORTHO05D009642 5.0e-67 259.6 272 49.6
TAR623G0780 Trochodendron aralioides HOM05D007559 ORTHO05D009642 4.7e-65 253.1 240 54.2
Gohir.A01G230700 Gossypium hirsutum HOM05D007559 ORTHO05D009642 1.4e-61 241.5 267 44.6
QL07p033351 Quercus lobata HOM05D007559 ORTHO05D009642 1.4e-61 241.5 241 51.9
PGSC0003DMG400026609 Solanum tuberosum HOM05D007559 ORTHO05D009642 4.1e-61 240.0 272 47.1
Gorai.002G267400 Gossypium raimondii HOM05D007559 ORTHO05D009642 1.6e-60 238.0 267 44.2
CAN.G481.10 Capsicum annuum HOM05D007559 ORTHO05D009642 7.8e-60 235.7 274 45.3
Solyc09g014930.1 Solanum lycopersicum HOM05D007559 ORTHO05D009642 7.8e-60 235.7 272 45.6
BcaB02g09190 Brassica carinata HOM05D007559 ORTHO05D009642 5.0e-59 233.0 276 42.8
Sopen09g007840 Solanum pennellii HOM05D007559 ORTHO05D009642 5.6e-58 229.6 269 45.0
AL4G35690 Arabidopsis lyrata HOM05D007559 ORTHO05D009642 2.8e-57 227.3 276 41.7
HanXRQChr12g0363701 Helianthus annuus HOM05D007559 ORTHO05D009642 8.1e-57 225.7 270 44.4
Sp4g20740 Schrenkiella parvula HOM05D007559 ORTHO05D009642 2.3e-56 224.2 276 40.9
MSTRG.5528 Avicennia marina HOM05D007559 ORTHO05D009642 3.1e-56 223.8 269 44.6
DCAR_028899 Daucus carota HOM05D007559 ORTHO05D009642 5.2e-56 223.0 205 56.1
C04p09160 Brassica napus HOM05D007559 ORTHO05D009642 1.2e-55 221.9 276 42.0
SHI27995 Sapria himalayana HOM05D007559 ORTHO05D009642 1.2e-55 221.9 281 44.5
Thhalv10017948m.g Eutrema salsugineum HOM05D007559 ORTHO05D009642 1.5e-55 221.5 276 41.3
AT2G38420 Arabidopsis thaliana HOM05D007559 ORTHO05D009642 3.4e-55 220.3 276 40.6
PSO384G3238 Papaver somniferum HOM05D007559 ORTHO05D009642 3.4e-55 220.3 275 46.2
BolC4t22525H Brassica oleracea HOM05D007559 ORTHO05D009642 5.8e-55 219.5 276 40.9
A05p07630 Brassica napus HOM05D007559 ORTHO05D009642 4.9e-54 216.5 276 39.5
CARHR133080 Cardamine hirsuta HOM05D007559 ORTHO05D009642 1.4e-53 214.9 268 39.9
BraA05t19732Z Brassica rapa HOM05D007559 ORTHO05D009642 5.4e-53 213.0 276 38.8
MBI15_g13921_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 1.0e-51 208.8 243 46.9
MBI02_g41148_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 3.3e-50 203.8 243 46.1
Migut.J00080 Erythranthe guttata HOM05D007559 ORTHO05D009642 7.3e-50 202.6 272 40.4
SGA_v2.0_scaffold85G26664 Striga asiatica HOM05D007559 ORTHO05D009642 9.5e-50 202.2 274 42.3
SalBow6G7175 Salvia bowleyana HOM05D007559 ORTHO05D009642 1.1e-48 198.7 279 41.2
CDE04G2050 Ceratophyllum demersum HOM05D007559 ORTHO05D009642 2.3e-48 197.6 230 46.5
PSO339G0892 Papaver somniferum HOM05D007559 ORTHO05D009642 4.0e-48 196.8 226 48.2
Glyma.18G209700 Glycine max HOM05D007559 ORTHO05D009642 1.9e-45 188.0 108 83.3
Lj2C64T2 Lonicera japonica HOM05D007559 ORTHO05D009642 5.1e-43 179.9 146 55.5
Aa31LG5G23900 Aethionema arabicum HOM05D007559 ORTHO05D009642 2.5e-42 177.6 276 37.3
AUR62006326 Chenopodium quinoa HOM05D007559 ORTHO05D009642 1.4e-40 171.8 148 54.7
CANSAT80G0499 Cannabis sativa HOM05D007559 ORTHO05D009642 9.9e-39 165.6 166 49.4
EL10Ac7g17033 Beta vulgaris HOM05D007559 ORTHO05D009642 3.8e-38 163.7 147 53.1
Actinidia32551 Actinidia chinensis HOM05D007559 ORTHO05D009642 4.0e-32 143.7 143 52.4
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.5e-31 141.7 153 47.7
Nitab4.5_0003592g0030 Nicotiana tabacum HOM05D007559 ORTHO05D009642 6.6e-27 126.3 140 45.0
Nitab4.5_0000047g0060 Nicotiana tabacum HOM05D007559 ORTHO05D009642 1.3e-25 122.1 140 45.0
Ca_07722_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 4.0e-24 117.1 113 57.5
Ca_07728_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 4.0e-24 117.1 113 57.5
TAR623G0609 Trochodendron aralioides HOM05D007559 ORTHO05D009642 6.9e-24 116.3 108 53.7
Sabra04G0101500 Salix brachista HOM05D007559 ORTHO05D009642 1.3e-17 95.5 74 64.9
MBI15_g43141_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 1.6e-17 95.1 93 49.5
Sabra01G0114900 Salix brachista HOM05D007559 ORTHO05D009642 3.7e-17 94.0 71 66.2
ECA236G1374 Erigeron canadensis HOM05D007559 ORTHO05D009642 4.0e-16 90.5 97 45.4
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 3.2e-13 80.9 152 28.9
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 4.2e-13 80.5 193 28.0
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.2e-12 79.0 193 26.9
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 1.6e-12 78.6 194 25.8
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 2.1e-12 78.2 192 26.6
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 3.5e-12 77.4 152 28.9
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 6.0e-12 76.6 191 27.2
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 1.0e-11 75.9 191 25.7
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 1.3e-11 75.5 215 27.9
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 3.9e-11 73.9 191 27.2
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 5.1e-11 73.6 203 26.1
ATR0829G167 Amborella trichopoda HOM05D007559 ORTHO05D009642 5.1e-11 73.6 89 42.7
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 5.1e-11 73.6 195 25.6
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 5.1e-11 73.6 195 25.6
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 5.1e-11 73.6 195 25.6
Glyma.06G227700 Glycine max HOM05D002453 ORTHO05D008746 6.7e-11 73.2 199 29.1
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 6.7e-11 73.2 212 26.4
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 6.7e-11 73.2 192 27.6
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 6.7e-11 73.2 195 24.6
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 6.7e-11 73.2 191 28.3
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 8.7e-11 72.8 191 26.2
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 1.9e-10 71.6 193 27.5
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 3.3e-10 70.9 153 26.8
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 3.3e-10 70.9 214 25.7
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 4.3e-10 70.5 191 24.6
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 5.7e-10 70.1 195 25.1
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 7.4e-10 69.7 192 25.0
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 7.4e-10 69.7 191 24.6
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 9.6e-10 69.3 193 23.3
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 9.6e-10 69.3 193 25.9
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 2.1e-09 68.2 151 27.2
Zm00001eb431040 Zea mays HOM05D007085 ORTHO05D008828 2.8e-09 67.8 177 26.0
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 3.7e-09 67.4 192 26.0
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 3.7e-09 67.4 192 26.0
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 4.8e-09 67.0 191 25.7
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 4.8e-09 67.0 191 24.6
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 6.3e-09 66.6 192 24.0
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 8.2e-09 66.2 191 24.6
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 8.2e-09 66.2 154 25.3
Ca_26205_v3 Cicer arietinum L. HOM05D002453 ORTHO05D008746 1.1e-08 65.9 234 26.9
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 1.1e-08 65.9 198 26.8
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 1.4e-08 65.5 151 27.2
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.4e-08 65.5 192 24.0
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 1.8e-08 65.1 191 24.6
arahy.Tifrunner.gnm1.ann1.QIT2C2 Arachis hypogaea HOM05D002453 ORTHO05D008746 3.1e-08 64.3 230 30.0
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 5.3e-08 63.5 191 23.0
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 9.0e-08 62.8 248 25.0
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 1.5e-07 62.0 195 23.6
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.5e-07 62.0 195 24.1
ATR0743G279 Amborella trichopoda HOM05D002453 ORTHO05D008746 2.0e-07 61.6 138 30.4
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 2.6e-07 61.2 195 24.1
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 3.4e-07 60.8 191 22.5
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 4.5e-07 60.5 196 24.5
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 4.5e-07 60.5 193 23.3
Sp5g29730 Schrenkiella parvula HOM05D002453 ORTHO05D002107 4.5e-07 60.5 148 25.0
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 5.9e-07 60.1 199 27.1
ATR0605G112 Amborella trichopoda HOM05D007085 ORTHO05D008828 7.6e-07 59.7 135 30.4
ECA247G2160 Erigeron canadensis HOM05D002453 ORTHO05D002107 7.6e-07 59.7 156 22.4
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 7.6e-07 59.7 194 24.7
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 7.6e-07 59.7 151 25.8
Phvul.009G243700 Phaseolus vulgaris HOM05D007155 ORTHO05D003034 7.6e-07 59.7 165 30.9
Rhsim04G0082900 Rhododendron simsii HOM05D000002 ORTHO05D000047 7.6e-07 59.7 74 40.5
PGSC0003DMG400044445 Solanum tuberosum HOM05D007085 ORTHO05D008828 7.6e-07 59.7 135 23.0
PGSC0003DMG402021252 Solanum tuberosum HOM05D007085 ORTHO05D008828 7.6e-07 59.7 135 23.0
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 1.0e-06 59.3 182 24.2
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 1.0e-06 59.3 196 25.0
CDE04G0400 Ceratophyllum demersum HOM05D007085 ORTHO05D008828 1.3e-06 58.9 150 24.0
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 1.3e-06 58.9 189 22.2
QL08p056726 Quercus lobata HOM05D002453 ORTHO05D008746 1.3e-06 58.9 152 29.6
CANSAT56G2932 Cannabis sativa HOM05D007085 ORTHO05D008828 1.7e-06 58.5 150 26.7
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 2.2e-06 58.2 196 25.5
Sabra15G0076800 Salix brachista HOM05D005025 ORTHO05D006499 2.2e-06 58.2 56 50.0
GSVIVG01008016001 Vitis vinifera HOM05D002453 ORTHO05D002107 2.9e-06 57.8 134 29.1
CAN.G4458.1 Capsicum annuum HOM05D007085 ORTHO05D008828 3.8e-06 57.4 136 24.3
CAN.G904.26 Capsicum annuum HOM05D007085 ORTHO05D008828 3.8e-06 57.4 136 24.3
CAN.G904.38 Capsicum annuum HOM05D007085 ORTHO05D008828 3.8e-06 57.4 136 24.3
Rhsim04G0048900 Rhododendron simsii HOM05D007559 ORTHO05D009642 5.0e-06 57.0 68 42.6
ClCG06G008020 Citrullus lanatus HOM05D007145 ORTHO05D008952 6.5e-06 56.6 204 26.5
ECA234G4395 Erigeron canadensis HOM05D000891 ORTHO05D000761 6.5e-06 56.6 159 28.9
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 8.5e-06 56.2 151 27.2


User provided reference genes

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